Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHN38_RS22220 Genome accession   NZ_CP107765
Coordinates   4824265..4825674 (-) Length   469 a.a.
NCBI ID   WP_016437466.1    Uniprot ID   A0ABS9XE30
Organism   Streptomyces sp. NBC_00588     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4819265..4830674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS22195 (OHN38_22180) - 4819626..4820273 (-) 648 WP_016437461.1 lipoprotein CseA -
  OHN38_RS22200 (OHN38_22185) - 4820261..4820800 (-) 540 WP_016437462.1 SigE family RNA polymerase sigma factor -
  OHN38_RS22205 (OHN38_22190) - 4821041..4821976 (-) 936 WP_330283063.1 A/G-specific adenine glycosylase -
  OHN38_RS22210 (OHN38_22195) - 4822144..4822998 (+) 855 WP_330283064.1 hypothetical protein -
  OHN38_RS22215 (OHN38_22200) disA 4823059..4824183 (-) 1125 WP_037783437.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHN38_RS22220 (OHN38_22205) radA 4824265..4825674 (-) 1410 WP_016437466.1 DNA repair protein RadA Machinery gene
  OHN38_RS22225 (OHN38_22210) - 4825891..4827585 (+) 1695 WP_330283065.1 hypothetical protein -
  OHN38_RS22230 (OHN38_22215) - 4827880..4828674 (-) 795 WP_037783536.1 hypothetical protein -
  OHN38_RS22235 (OHN38_22220) - 4828812..4829744 (+) 933 WP_330283066.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49704.85 Da        Isoelectric Point: 7.7221

>NTDB_id=645876 OHN38_RS22220 WP_016437466.1 4824265..4825674(-) (radA) [Streptomyces sp. NBC_00588]
MAARTKTAKERPSYRCKECGWQTAKWLGRCPECQAWGTIDEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLAAVL
GHLDAVKPALLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLNF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPPGMKVLEVADIGDALRVLPRSRRREAPREEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=645876 OHN38_RS22220 WP_016437466.1 4824265..4825674(-) (radA) [Streptomyces sp. NBC_00588]
ATGGCTGCCCGTACGAAGACCGCCAAGGAGCGCCCGTCCTACCGCTGCAAGGAATGCGGCTGGCAGACGGCCAAGTGGCT
CGGTCGCTGCCCCGAGTGCCAGGCCTGGGGGACGATCGACGAGTACGGCGCGCCTGCGGTGCGGACGACGGCGCCGGGGC
GCGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCAGCACCGGGGTCCCGGAGCTG
GACCGGGTGCTCGGCGGCGGCCTCGTGCCCGGCGCGGTCGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCGACGCT
CCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTATGTCACGGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCGGCGCCATCGACGACCATCTGTATCTCGCCGCCGAGACCGATCTGGCCGCCGTCCTC
GGCCACTTGGACGCCGTGAAGCCCGCGCTGCTCATCCTGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTGCGCGAGGTCGCCGGCGCACTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TGGTGGGCCATGTCACCAAGGACGGCGCCATCGCCGGACCGCGCCTGCTGGAGCACCTCGTGGACGTCGTCCTCAACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTGCGCGGCGTCAAGAACCGCTACGGCACCACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCAAGTGGACTTTTCCTGACCAGACGTGACGAACCGGTCCCCG
GCACCTGTCTGACGGTCACGCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCGCGCCGTACGACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGTGGCGTGAAGTTGTCGGAGCCCGCCGCCGACCTCG
CCGTGGCCCTCGCGCTGGCGTCGGCCGCGAGCGACACCCCGCTGCCCAAGAACCTGGTCGCGATCGGCGAGGTCGGCCTT
GCGGGCGAGGTCAGAAGGGTCACGGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGCCTGGGCTTCACCCACGCGCTCGT
TCCGGGCGATCCCGGCAAGATCCCTCCCGGCATGAAGGTCCTGGAAGTCGCCGACATAGGAGACGCTCTCAGAGTCCTTC
CACGCTCCCGTCGCCGAGAGGCCCCGCGGGAGGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

44

95.949

0.422
  radA Streptococcus mitis NCTC 12261

44

95.949

0.422
  radA Streptococcus pneumoniae Rx1

43.556

95.949

0.418
  radA Streptococcus pneumoniae D39

43.556

95.949

0.418
  radA Streptococcus pneumoniae R6

43.556

95.949

0.418
  radA Streptococcus pneumoniae TIGR4

43.556

95.949

0.418
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.826

96.588

0.414