Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H7R10_RS05695 Genome accession   NZ_AP021933
Coordinates   1207168..1207905 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WP2-W18-ESBL-08     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1202168..1212905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R10_RS05670 (WP2W18E08_11070) tyrA 1202542..1203663 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  H7R10_RS05675 (WP2W18E08_11080) pheA 1203706..1204866 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  H7R10_RS05680 pheL 1204965..1205012 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  H7R10_RS05685 (WP2W18E08_11090) raiA 1205116..1205457 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  H7R10_RS05690 (WP2W18E08_11100) - 1205718..1207064 (-) 1347 WP_024179531.1 IS4-like element IS4 family transposase -
  H7R10_RS05695 (WP2W18E08_11110) comL 1207168..1207905 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  H7R10_RS05700 (WP2W18E08_11120) rluD 1208040..1209020 (+) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H7R10_RS05705 (WP2W18E08_11130) yfiH 1209017..1209748 (+) 732 WP_000040134.1 purine nucleoside phosphorylase YfiH -
  H7R10_RS05710 (WP2W18E08_11140) clpC 1209878..1212451 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=64549 H7R10_RS05695 WP_000197686.1 1207168..1207905(-) (comL) [Escherichia coli strain WP2-W18-ESBL-08]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=64549 H7R10_RS05695 WP_000197686.1 1207168..1207905(-) (comL) [Escherichia coli strain WP2-W18-ESBL-08]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment