Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SPB_RS06260 | Genome accession | NZ_AEUT02000001 |
| Coordinates | 1253764..1254261 (-) | Length | 165 a.a. |
| NCBI ID | WP_003103409.1 | Uniprot ID | A0A0E2UEH7 |
| Organism | Streptococcus parauberis NCFD 2020 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1248764..1259261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPB_RS06245 (SPB_1291) | - | 1250863..1251807 (+) | 945 | WP_003105810.1 | magnesium transporter CorA family protein | - |
| SPB_RS06250 (SPB_1292) | - | 1251892..1252557 (+) | 666 | WP_003105966.1 | DUF1129 domain-containing protein | - |
| SPB_RS06255 (SPB_1293) | rpsR | 1253436..1253675 (-) | 240 | WP_003102945.1 | 30S ribosomal protein S18 | - |
| SPB_RS06260 (SPB_1294) | ssb | 1253764..1254261 (-) | 498 | WP_003103409.1 | single-stranded DNA-binding protein | Machinery gene |
| SPB_RS06265 (SPB_1295) | rpsF | 1254282..1254572 (-) | 291 | WP_003104479.1 | 30S ribosomal protein S6 | - |
| SPB_RS06270 (SPB_1296) | mutY | 1255558..1256697 (+) | 1140 | WP_037621360.1 | A/G-specific adenine glycosylase | - |
| SPB_RS06275 (SPB_1297) | - | 1256775..1257137 (+) | 363 | WP_003105722.1 | hypothetical protein | - |
| SPB_RS06280 (SPB_1298) | trxA | 1257179..1257493 (-) | 315 | WP_003102914.1 | thioredoxin | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18163.89 Da Isoelectric Point: 4.8894
>NTDB_id=64549 SPB_RS06260 WP_003103409.1 1253764..1254261(-) (ssb) [Streptococcus parauberis NCFD 2020]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGLNNNSSSSNNSYSAPAQQTPNFGRDDSPFGNSNPMDISD
DDLPF
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGLNNNSSSSNNSYSAPAQQTPNFGRDDSPFGNSNPMDISD
DDLPF
Nucleotide
Download Length: 498 bp
>NTDB_id=64549 SPB_RS06260 WP_003103409.1 1253764..1254261(-) (ssb) [Streptococcus parauberis NCFD 2020]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCAGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTCAAAAGTCAAAATGGGGAACGTGAAGCAGATTTCATTAACTGTGTAATCT
GGCGTCAACCAGCTGAGAACTTAGCGAATTGGGCTAAAAAGGGTGCTTTAGTTGGGATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCATCTAACTCTTATAATGGTGGTGGATTAAATAATAATTCTTCATCATCAAACAATAGTTACT
CAGCCCCTGCTCAACAAACACCTAATTTTGGTCGCGATGATAGCCCATTTGGTAATTCAAATCCAATGGATATCTCAGAT
GACGATCTACCATTCTAA
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCAGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTCAAAAGTCAAAATGGGGAACGTGAAGCAGATTTCATTAACTGTGTAATCT
GGCGTCAACCAGCTGAGAACTTAGCGAATTGGGCTAAAAAGGGTGCTTTAGTTGGGATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCATCTAACTCTTATAATGGTGGTGGATTAAATAATAATTCTTCATCATCAAACAATAGTTACT
CAGCCCCTGCTCAACAAACACCTAATTTTGGTCGCGATGATAGCCCATTTGGTAATTCAAATCCAATGGATATCTCAGAT
GACGATCTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.195 |
100 |
0.624 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.471 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
64.242 |
0.37 |