Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | SPB_RS01750 | Genome accession | NZ_AEUT02000001 |
| Coordinates | 350499..351728 (+) | Length | 409 a.a. |
| NCBI ID | WP_003103169.1 | Uniprot ID | A0A0E2URT0 |
| Organism | Streptococcus parauberis NCFD 2020 | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 324415..355295 | 350499..351728 | within | 0 |
Gene organization within MGE regions
Location: 324415..355295
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPB_RS01625 (SPB_0332) | - | 324415..325035 (+) | 621 | WP_037621088.1 | glycoside hydrolase family 73 protein | - |
| SPB_RS01630 (SPB_0333) | - | 325176..325979 (+) | 804 | WP_003105112.1 | glycoside hydrolase family 73 protein | - |
| SPB_RS01635 (SPB_0334) | - | 326039..326560 (+) | 522 | WP_003104315.1 | hypothetical protein | - |
| SPB_RS01640 (SPB_0335) | - | 326634..327014 (+) | 381 | WP_003103937.1 | DUF1149 family protein | - |
| SPB_RS01645 (SPB_0336) | - | 327014..327862 (+) | 849 | WP_003104962.1 | DegV family protein | - |
| SPB_RS01650 (SPB_0337) | dapB | 327880..328647 (+) | 768 | WP_003105813.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| SPB_RS01655 (SPB_0338) | - | 328644..329855 (+) | 1212 | WP_003102825.1 | CCA tRNA nucleotidyltransferase | - |
| SPB_RS01660 (SPB_0339) | - | 329848..331725 (+) | 1878 | WP_003104195.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| SPB_RS01665 (SPB_0340) | - | 331729..332202 (+) | 474 | WP_003105038.1 | GNAT family N-acetyltransferase | - |
| SPB_RS01670 (SPB_0341) | - | 332337..334073 (+) | 1737 | WP_003102488.1 | ABC transporter ATP-binding protein | - |
| SPB_RS01675 (SPB_0342) | - | 334073..335842 (+) | 1770 | WP_003103430.1 | ABC transporter ATP-binding protein | - |
| SPB_RS01680 (SPB_0343) | gdhA | 335973..337319 (+) | 1347 | WP_003102566.1 | NADP-specific glutamate dehydrogenase | - |
| SPB_RS01685 (SPB_0344) | - | 337386..337796 (+) | 411 | WP_003104023.1 | peptide deformylase | - |
| SPB_RS01690 (SPB_0345) | - | 337834..338019 (-) | 186 | WP_003102863.1 | hypothetical protein | - |
| SPB_RS10955 | - | 338169..338348 (-) | 180 | Protein_339 | hypothetical protein | - |
| SPB_RS01700 (SPB_0347) | - | 338742..340463 (+) | 1722 | WP_003105372.1 | ABC transporter ATP-binding protein | - |
| SPB_RS01705 (SPB_0348) | - | 340465..342207 (+) | 1743 | WP_003104485.1 | ABC transporter ATP-binding protein | - |
| SPB_RS01710 (SPB_0349) | mvk | 342370..343248 (+) | 879 | WP_003105664.1 | mevalonate kinase | - |
| SPB_RS01715 (SPB_0350) | mvaD | 343230..344165 (+) | 936 | WP_003104536.1 | diphosphomevalonate decarboxylase | - |
| SPB_RS01720 (SPB_0351) | - | 344166..345167 (+) | 1002 | WP_003104029.1 | phosphomevalonate kinase | - |
| SPB_RS01725 (SPB_0352) | fni | 345167..346162 (+) | 996 | WP_003102845.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| SPB_RS01730 (SPB_0353) | - | 346225..347508 (-) | 1284 | WP_003106052.1 | hydroxymethylglutaryl-CoA reductase, degradative | - |
| SPB_RS01735 (SPB_0354) | - | 347505..348671 (-) | 1167 | WP_003104825.1 | hydroxymethylglutaryl-CoA synthase | - |
| SPB_RS01740 (SPB_0355) | - | 348863..349702 (+) | 840 | WP_003105934.1 | thymidylate synthase | - |
| SPB_RS01745 (SPB_0356) | - | 349779..350294 (+) | 516 | WP_003104878.1 | dihydrofolate reductase | - |
| SPB_RS01750 (SPB_0358) | clpX | 350499..351728 (+) | 1230 | WP_003103169.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| SPB_RS01755 (SPB_0359) | yihA | 351737..352336 (+) | 600 | WP_003104323.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| SPB_RS01760 (SPB_0360) | - | 352706..353164 (+) | 459 | WP_003103232.1 | hypothetical protein | - |
| SPB_RS01765 (SPB_0361) | clpC | 353187..355295 (-) | 2109 | WP_003105519.1 | AAA family ATPase | Regulator |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 45058.55 Da Isoelectric Point: 4.4670
>NTDB_id=64535 SPB_RS01750 WP_003103169.1 350499..351728(+) (clpX) [Streptococcus parauberis NCFD 2020]
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA
Nucleotide
Download Length: 1230 bp
>NTDB_id=64535 SPB_RS01750 WP_003103169.1 350499..351728(+) (clpX) [Streptococcus parauberis NCFD 2020]
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACTGCATAG
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACTGCATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
86.797 |
100 |
0.868 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
56.359 |
98.044 |
0.553 |