Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPB_RS00460 Genome accession   NZ_AEUT02000001
Coordinates   77621..78430 (+) Length   269 a.a.
NCBI ID   WP_037619792.1    Uniprot ID   A0AAE4L2Y1
Organism   Streptococcus parauberis NCFD 2020     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 72621..83430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS00435 (SPB_0089) - 72979..73683 (-) 705 WP_003104614.1 amino acid ABC transporter permease -
  SPB_RS00440 (SPB_0090) - 73697..74512 (-) 816 WP_003105408.1 transporter substrate-binding domain-containing protein -
  SPB_RS00445 (SPB_0091) - 74525..75304 (-) 780 WP_003102773.1 amino acid ABC transporter ATP-binding protein -
  SPB_RS00450 (SPB_0092) vicR 75552..76262 (+) 711 WP_003102576.1 response regulator YycF Regulator
  SPB_RS00455 (SPB_0093) vicK 76255..77616 (+) 1362 WP_003103813.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPB_RS00460 (SPB_0094) vicX 77621..78430 (+) 810 WP_037619792.1 MBL fold metallo-hydrolase Regulator
  SPB_RS00465 (SPB_0095) rnc 78528..79220 (+) 693 WP_003103277.1 ribonuclease III -
  SPB_RS00470 (SPB_0096) smc 79221..82766 (+) 3546 WP_003104847.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30296.19 Da        Isoelectric Point: 5.7226

>NTDB_id=64530 SPB_RS00460 WP_037619792.1 77621..78430(+) (vicX) [Streptococcus parauberis NCFD 2020]
MENFGFKYSILASGSTGNSFYLETPKQKILVDAGLTGKKMTSLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARKYHLD
IYANQNTWKIIDDRNMIGKIDSEHKHIFDRDKVMTFGDIDIESFGVSHDAHDPQFYRFMKDNKSFVMLTDTGYVSDRMSG
IIENADGYLIESNHDIEILRSGGYPWSLKQRILSDRGHLSNEDGAQAMIRSMGNATKKIYLGHLSKENNIKELAHMTMEN
QLAMADLAVGSDFKVYDTSPDTASPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=64530 SPB_RS00460 WP_037619792.1 77621..78430(+) (vicX) [Streptococcus parauberis NCFD 2020]
ATGGAGAATTTTGGATTTAAATATAGTATATTAGCCTCTGGTTCAACAGGAAACAGTTTTTACTTGGAAACACCAAAGCA
AAAGATTTTGGTCGATGCAGGACTCACTGGTAAAAAAATGACAAGTCTCTTAGCTGAGATTGATCGGAAACCTGAAGATT
TAGATGCTATCTTGATTACACATGAACATTCTGACCATATTAAAGGTGTCGGGGTATTGGCTAGAAAATATCATTTAGAT
ATCTATGCTAATCAAAATACTTGGAAAATAATTGATGACCGCAATATGATTGGCAAAATTGATTCCGAACACAAACATAT
CTTTGATCGGGATAAAGTCATGACTTTTGGTGATATTGATATTGAAAGTTTTGGAGTTAGTCATGATGCCCATGATCCGC
AGTTTTATCGTTTTATGAAGGATAACAAATCCTTTGTCATGTTGACTGATACTGGTTATGTCTCGGATCGCATGTCGGGA
ATTATTGAAAATGCTGATGGTTACTTGATTGAATCAAATCATGACATCGAAATTTTAAGATCTGGTGGCTATCCTTGGAG
CTTAAAACAACGTATATTATCTGATAGAGGGCATTTATCTAACGAAGATGGTGCACAAGCTATGATACGAAGTATGGGAA
ATGCTACTAAGAAGATTTATCTTGGACATTTGAGTAAAGAAAATAATATCAAAGAGTTGGCTCATATGACGATGGAAAAT
CAACTAGCTATGGCAGACTTAGCTGTCGGTTCTGATTTCAAAGTCTACGATACCTCCCCTGATACGGCTAGTCCTTTGAC
AGATATCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758

Multiple sequence alignment