Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SPB_RS00370 Genome accession   NZ_AEUT02000001
Coordinates   58836..59837 (+) Length   333 a.a.
NCBI ID   WP_003102466.1    Uniprot ID   F1YXF1
Organism   Streptococcus parauberis NCFD 2020     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 53836..64837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS00350 (SPB_0072) - 55047..56135 (+) 1089 WP_003103913.1 DUF871 domain-containing protein -
  SPB_RS00355 (SPB_0073) - 56231..56794 (+) 564 WP_003104899.1 TetR/AcrR family transcriptional regulator -
  SPB_RS00360 (SPB_0074) - 56806..57522 (+) 717 WP_003104285.1 CPBP family intramembrane glutamic endopeptidase -
  SPB_RS00365 (SPB_0075) - 57579..58664 (-) 1086 WP_003103188.1 Xaa-Pro peptidase family protein -
  SPB_RS00370 (SPB_0076) ccpA 58836..59837 (+) 1002 WP_003102466.1 catabolite control protein A Regulator
  SPB_RS00375 (SPB_0077) - 59881..61347 (+) 1467 WP_003105718.1 alpha-amylase -
  SPB_RS00380 (SPB_0078) - 61420..62418 (+) 999 WP_003104452.1 glycosyltransferase family 4 protein -
  SPB_RS00385 (SPB_0079) - 62420..63751 (+) 1332 WP_003103699.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36759.97 Da        Isoelectric Point: 6.0718

>NTDB_id=64527 SPB_RS00370 WP_003102466.1 58836..59837(+) (ccpA) [Streptococcus parauberis NCFD 2020]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVSVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKLAVSNVIDILVENHKKIAFVSGPLIDDINGKVRLLGYKEGLRKNKLDYKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVGEDELAAGLLNGLFAAGKNVPEDFEIITSNDSPVVDYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEDLEEKEI
LLNHGIKRRGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=64527 SPB_RS00370 WP_003102466.1 58836..59837(+) (ccpA) [Streptococcus parauberis NCFD 2020]
ATGAACACAGATGATACAATTACGATTTATGACGTTGCTCGCGAAGCAGGTGTTTCTATGGCAACAGTAAGTCGTGTTGT
CAACGGAAATAAAAACGTTAAAGAAAATACACGCAAAAAAGTGTTGGAAGTTATAGACCGTTTAGATTATCGTCCTAATG
CAGTTGCCCGAGGACTAGCAAGTAAAAAAACAACTACAGTAGGTGTGGTAATTCCAAATATTGCCAATAGTTATTTTTCA
ATTTTAGCAAAAGGGATTGATGATATTGCTGCAATGTACAAGTATAATATTGTCCTTGCATCAAGTGATGAAGATGATGA
TAAAGAGGTAAGTGTTGTTAACACTCTATTTGCAAAACAAGTAGATGGTATTATCTTTATGGGTCACCATTTAACAGAGA
AAATTCGTGCAGAATTTTCTCGTTCACGTACACCAATCGTTCTAGCTGGAACAGTTGACTTGGAACATCAGTTACCAAGT
GTTAATATTGATTATAAATTGGCAGTTTCCAATGTAATTGATATTTTAGTAGAAAATCACAAAAAAATTGCTTTTGTGTC
TGGACCACTAATCGATGATATCAATGGAAAAGTGAGATTACTAGGCTATAAAGAAGGACTTAGAAAGAATAAGTTGGACT
ATAAAGAAGGATTAGTTTTTGAAGCTAATTATTCTTATAAAGAAGGTTTTGAATTAGCTCAACGCGTAATCAATTCAGGT
GCTACAGCAGCTTATGTTGGAGAAGATGAATTAGCAGCAGGCTTACTTAATGGTTTATTTGCAGCAGGGAAAAATGTTCC
TGAGGACTTTGAAATTATTACAAGTAACGATTCACCAGTTGTTGACTATACAAGACCAAATCTTTCTTCAATCAGTCAAC
CTGTGTATGATTTAGGAGCTGTCAGCATGCGTATGTTGACAAAAATCATGAACAAAGAAGATTTGGAAGAAAAAGAAATT
CTCCTAAACCATGGTATCAAACGTCGTGGTACAACAAAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F1YXF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.679

100

0.787
  ccpA Streptococcus pneumoniae D39

75.976

100

0.76
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556

Multiple sequence alignment