Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   L0992_RS14610 Genome accession   NZ_CP090854
Coordinates   3287144..3287776 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio pomeroyi strain YSX02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3282144..3292776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS14590 (L0992_14585) - 3283859..3284329 (+) 471 WP_050649572.1 TIGR02444 family protein -
  L0992_RS14595 (L0992_14590) - 3284623..3285615 (+) 993 WP_373949003.1 hydrolase -
  L0992_RS14600 (L0992_14595) - 3285745..3285957 (+) 213 WP_136974327.1 YheU family protein -
  L0992_RS14605 (L0992_14600) - 3286035..3286904 (+) 870 WP_017632107.1 phosphoribulokinase -
  L0992_RS14610 (L0992_14605) crp 3287144..3287776 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  L0992_RS14615 (L0992_14610) - 3287920..3288711 (-) 792 WP_373949006.1 DUF1338 domain-containing protein -
  L0992_RS14620 (L0992_14615) astD 3288926..3290383 (-) 1458 WP_373949008.1 succinylglutamate-semialdehyde dehydrogenase -
  L0992_RS14625 (L0992_14620) astA 3290423..3291442 (-) 1020 WP_123285401.1 arginine N-succinyltransferase -
  L0992_RS14630 (L0992_14625) - 3291550..3292761 (-) 1212 WP_373949011.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=645269 L0992_RS14610 WP_004410522.1 3287144..3287776(+) (crp) [Vibrio pomeroyi strain YSX02]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=645269 L0992_RS14610 WP_004410522.1 3287144..3287776(+) (crp) [Vibrio pomeroyi strain YSX02]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGCCTTTCAGCGCAAATGGCGAGCCGCCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCAAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467