Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SMSK321_RS09205 | Genome accession | NZ_AEDT01000028 |
| Coordinates | 16755..17708 (-) | Length | 317 a.a. |
| NCBI ID | WP_000345131.1 | Uniprot ID | - |
| Organism | Streptococcus mitis SK321 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 11755..22708
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMSK321_RS09180 (SMSK321_1261) | - | 12508..13131 (-) | 624 | WP_000932630.1 | hypothetical protein | - |
| SMSK321_RS09185 (SMSK321_1262) | jag | 13187..14176 (-) | 990 | WP_000260007.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| SMSK321_RS09190 (SMSK321_1263) | - | 14194..15018 (-) | 825 | WP_004235575.1 | membrane protein insertase YidC | - |
| SMSK321_RS09195 (SMSK321_1264) | rnpA | 14993..15364 (-) | 372 | WP_000739245.1 | ribonuclease P protein component | - |
| SMSK321_RS09200 (SMSK321_1265) | - | 15514..16704 (-) | 1191 | WP_000167794.1 | acetate kinase | - |
| SMSK321_RS09205 (SMSK321_1266) | comYH | 16755..17708 (-) | 954 | WP_000345131.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SMSK321_RS09210 (SMSK321_1267) | - | 17769..18356 (-) | 588 | WP_000679788.1 | class I SAM-dependent methyltransferase | - |
| SMSK321_RS0102610 | comGG/cglG | 18389..18802 (-) | 414 | WP_000265640.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SMSK321_RS09215 (SMSK321_1268) | comGF/cglF | 18780..19241 (-) | 462 | WP_000250512.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SMSK321_RS09220 (SMSK321_1269) | comGE/cglE | 19204..19506 (-) | 303 | WP_255262223.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SMSK321_RS09225 (SMSK321_1270) | comGD/cglD | 19469..19873 (-) | 405 | WP_000588032.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SMSK321_RS09230 (SMSK321_1271) | comGC/cglC | 19866..20192 (-) | 327 | WP_000738643.1 | comG operon protein ComGC | Machinery gene |
| SMSK321_RS09235 (SMSK321_1272) | comGB/cglB | 20194..21210 (-) | 1017 | WP_080550783.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SMSK321_RS09240 (SMSK321_1273) | comGA/cglA/cilD | 21158..22100 (-) | 943 | Protein_25 | competence type IV pilus ATPase ComGA | Machinery gene |
| SMSK321_RS09245 (SMSK321_1274) | - | 22177..22542 (-) | 366 | WP_000286410.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35624.88 Da Isoelectric Point: 4.3656
>NTDB_id=64515 SMSK321_RS09205 WP_000345131.1 16755..17708(-) (comYH) [Streptococcus mitis SK321]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEKEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEANLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEKEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEANLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=64515 SMSK321_RS09205 WP_000345131.1 16755..17708(-) (comYH) [Streptococcus mitis SK321]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATTCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCCTGGTGGAGCAAAACAGCATTTATCTGGATGGTGAAACTGAGCTAAATCAGGTAAAAGATAACAATC
AAGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAGCCCCTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGAAGGAGATTACGATCCTCGAAATGGGTTCTGGCATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCGGCTAGTATGGCAGATGTAATTGGTTTGCAG
GCTGGTTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGACGCCGTTGCGTCACGCCATCAAGTTGCTTCTAGTCAAGAACATACCTACGCTCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAGTCAGATGGCTACGCTATTTTTCTCGCTCCGAGTGATTTGTTGACCAGTCCTCAG
AGTGATTTGTTGAAAGGGTGGTTGAAAGAGGAGGCGAATCTAGTTGCCATGATTAGTTTGCCTGAAAATCTCTTTGCCAA
TGCCAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATTCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCCTGGTGGAGCAAAACAGCATTTATCTGGATGGTGAAACTGAGCTAAATCAGGTAAAAGATAACAATC
AAGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAGCCCCTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGAAGGAGATTACGATCCTCGAAATGGGTTCTGGCATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCGGCTAGTATGGCAGATGTAATTGGTTTGCAG
GCTGGTTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGACGCCGTTGCGTCACGCCATCAAGTTGCTTCTAGTCAAGAACATACCTACGCTCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAGTCAGATGGCTACGCTATTTTTCTCGCTCCGAGTGATTTGTTGACCAGTCCTCAG
AGTGATTTGTTGAAAGGGTGGTTGAAAGAGGAGGCGAATCTAGTTGCCATGATTAGTTTGCCTGAAAATCTCTTTGCCAA
TGCCAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
54.633 |
98.738 |
0.539 |
| comYH | Streptococcus mutans UA159 |
54.313 |
98.738 |
0.536 |