Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   L0990_RS13295 Genome accession   NZ_CP090843
Coordinates   2953400..2954032 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio kanaloae strain A6-11SW3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2948400..2959032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0990_RS13275 (L0990_13260) - 2950141..2950611 (+) 471 WP_017055814.1 TIGR02444 family protein -
  L0990_RS13280 (L0990_13265) - 2950888..2951880 (+) 993 WP_373937893.1 hydrolase -
  L0990_RS13285 (L0990_13270) - 2952000..2952212 (+) 213 WP_017055816.1 YheU family protein -
  L0990_RS13290 (L0990_13275) - 2952290..2953159 (+) 870 WP_017055817.1 phosphoribulokinase -
  L0990_RS13295 (L0990_13280) crp 2953400..2954032 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  L0990_RS13300 (L0990_13285) - 2954136..2954927 (-) 792 WP_017055819.1 DUF1338 domain-containing protein -
  L0990_RS13305 (L0990_13290) astD 2955140..2956597 (-) 1458 WP_373937895.1 succinylglutamate-semialdehyde dehydrogenase -
  L0990_RS13310 (L0990_13295) astA 2956638..2957657 (-) 1020 WP_046224644.1 arginine N-succinyltransferase -
  L0990_RS13315 (L0990_13300) - 2957765..2958976 (-) 1212 WP_017055822.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=645137 L0990_RS13295 WP_004410522.1 2953400..2954032(+) (crp) [Vibrio kanaloae strain A6-11SW3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=645137 L0990_RS13295 WP_004410522.1 2953400..2954032(+) (crp) [Vibrio kanaloae strain A6-11SW3]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATTGTGAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTATTCGAAGAAGAC
CAAGAGCGTACTGCGTGGGTTCGAGCAAAATCTCCTTGTGAAGTTGCTGAGATTTCTTTCAAGAAATTCCGCCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGTCTTTCAGCGCAAATGGCAAGCCGCCTACAAGTAACTAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTAACCGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAACCCGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAAATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467