Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LZI70_RS08345 Genome accession   NZ_CP090614
Coordinates   1896859..1897491 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio pelagius strain WXL662     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1891859..1902491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS08325 (LZI70_08315) - 1891867..1893078 (+) 1212 WP_255229770.1 aspartate aminotransferase family protein -
  LZI70_RS08330 (LZI70_08320) astA 1893188..1894207 (+) 1020 WP_255231790.1 arginine N-succinyltransferase -
  LZI70_RS08335 (LZI70_08325) astD 1894240..1895697 (+) 1458 WP_255229771.1 succinylglutamate-semialdehyde dehydrogenase -
  LZI70_RS08340 (LZI70_08330) - 1895911..1896702 (+) 792 WP_255229772.1 DUF1338 domain-containing protein -
  LZI70_RS08345 (LZI70_08335) crp 1896859..1897491 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  LZI70_RS08350 (LZI70_08340) - 1897733..1898602 (-) 870 WP_255229773.1 phosphoribulokinase -
  LZI70_RS08355 (LZI70_08345) - 1898680..1898892 (-) 213 WP_255229774.1 YheU family protein -
  LZI70_RS08360 (LZI70_08350) - 1898977..1899954 (-) 978 WP_255229775.1 hydrolase -
  LZI70_RS08365 (LZI70_08355) - 1900097..1900585 (-) 489 WP_255229776.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=643998 LZI70_RS08345 WP_004410522.1 1896859..1897491(-) (crp) [Vibrio pelagius strain WXL662]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=643998 LZI70_RS08345 WP_004410522.1 1896859..1897491(-) (crp) [Vibrio pelagius strain WXL662]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGTACTCTGATTCACGCTGGTGAAAAGGCAGAGACCCTGTACTACATCGTGAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATTCTTTCTTACCTAAACCAAGGCGACTTTATCGGCGAGCTTGGCCTATTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGTCTTTCTGCTCAAATGGCAAGCCGTCTACAAGTTACCAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTTACTGGCCGTATTGCACAAACGCTACTAAACCTAGCGAAACAACCTGATGCGATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAGATTGTTGGCTGTTCGCGTGAGACTGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAAAACCTAATTTCTGCTCACGGTAAAACTATCGTTGTTTACGGTACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467