Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LZG50_RS12755 Genome accession   NZ_CP090611
Coordinates   2561571..2562200 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate DCE7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2556571..2567200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG50_RS12740 (LZG50_12740) helD 2556813..2558867 (-) 2055 WP_024248145.1 DNA helicase IV -
  LZG50_RS12745 (LZG50_12745) yccF 2558990..2559436 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LZG50_RS12750 (LZG50_12750) yccS 2559446..2561608 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LZG50_RS12755 (LZG50_12755) sxy/tfoX 2561571..2562200 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LZG50_RS12760 (LZG50_12760) sulA 2562418..2562927 (+) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  LZG50_RS12765 (LZG50_12765) ompA 2563283..2564335 (+) 1053 WP_032328838.1 porin OmpA -
  LZG50_RS12770 (LZG50_12770) matP 2564411..2564863 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  LZG50_RS12775 (LZG50_12775) ycbZ 2565049..2566809 (+) 1761 WP_024231838.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=643968 LZG50_RS12755 WP_000839153.1 2561571..2562200(-) (sxy/tfoX) [Escherichia coli isolate DCE7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=643968 LZG50_RS12755 WP_000839153.1 2561571..2562200(-) (sxy/tfoX) [Escherichia coli isolate DCE7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCTGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGAGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1