Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0B74_RS00040 Genome accession   NZ_CP090603
Coordinates   9260..9781 (+) Length   173 a.a.
NCBI ID   WP_013436847.1    Uniprot ID   A0A7X7H2X7
Organism   Lactobacillus amylovorus strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4260..14781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B74_RS00030 gyrA 6234..8699 (+) 2466 WP_013436846.1 DNA gyrase subunit A -
  L0B74_RS00035 rpsF 8918..9214 (+) 297 WP_005723612.1 30S ribosomal protein S6 -
  L0B74_RS00040 ssb 9260..9781 (+) 522 WP_013436847.1 single-stranded DNA-binding protein Machinery gene
  L0B74_RS00045 rpsR 9810..10046 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  L0B74_RS00050 - 10215..12236 (+) 2022 WP_249905705.1 DHH family phosphoesterase -
  L0B74_RS00055 rplI 12251..12706 (+) 456 WP_170088837.1 50S ribosomal protein L9 -
  L0B74_RS00060 dnaB 12735..14129 (+) 1395 WP_013436850.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18945.47 Da        Isoelectric Point: 4.7317

>NTDB_id=643881 L0B74_RS00040 WP_013436847.1 9260..9781(+) (ssb) [Lactobacillus amylovorus strain S1]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKSAENFCNFTSKGSLVGVDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNNGNNSTPSTNNFQNNGGSQNNNPQNNNNQNNAQDPFAGS
GDTIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=643881 L0B74_RS00040 WP_013436847.1 9260..9781(+) (ssb) [Lactobacillus amylovorus strain S1]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGGAGCGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAAGGTGAGAGAGGCGCAGACTTCATTAGCTGTGTAATCT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACCTCTAAAGGTTCATTAGTTGGTGTAGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGACGGGCAAAGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCGCATTACTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAATGGAAATAATAGTACACCAAGTACTAACAATTTCC
AAAATAATGGCGGATCACAAAACAATAATCCACAGAATAATAACAATCAAAATAATGCACAAGATCCATTCGCTGGATCA
GGTGATACGATTGATATTTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X7H2X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.584

100

0.636
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.561
  ssb Glaesserella parasuis strain SC1401

34.615

100

0.364