Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L0F67_RS02340 Genome accession   NZ_CP090556
Coordinates   472353..472922 (+) Length   189 a.a.
NCBI ID   WP_254240751.1    Uniprot ID   -
Organism   Actinobacillus suis strain D20_277     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 467353..477922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0F67_RS02295 (L0F67_02300) rplP 467414..467824 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  L0F67_RS02300 (L0F67_02305) rpsC 467838..468542 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  L0F67_RS02305 (L0F67_02310) rplV 468561..468893 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  L0F67_RS02310 (L0F67_02315) rpsS 468904..469179 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  L0F67_RS02315 (L0F67_02320) rplB 469207..470028 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  L0F67_RS02320 (L0F67_02325) rplW 470049..470354 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  L0F67_RS02325 (L0F67_02330) rplD 470351..470953 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  L0F67_RS02330 (L0F67_02335) rplC 470969..471595 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  L0F67_RS02335 (L0F67_02340) rpsJ 471621..471932 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  L0F67_RS02340 (L0F67_02345) sxy/tfoX 472353..472922 (+) 570 WP_254240751.1 TfoX/Sxy family DNA transformation protein Regulator
  L0F67_RS02345 (L0F67_02350) rpsT 473051..473314 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  L0F67_RS02350 murJ 473834..474696 (+) 863 Protein_447 murein biosynthesis integral membrane protein MurJ -
  L0F67_RS02355 murJ 474699..475286 (+) 588 WP_254240752.1 murein biosynthesis integral membrane protein MurJ -
  L0F67_RS02360 (L0F67_02360) - 475308..476374 (+) 1067 Protein_449 MFS transporter -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22154.89 Da        Isoelectric Point: 9.8246

>NTDB_id=643412 L0F67_RS02340 WP_254240751.1 472353..472922(+) (sxy/tfoX) [Actinobacillus suis strain D20_277]
MKYTTKELERLKALLSPLGEVTFKPYFSFLGIFKNDTMFALYKDQHLYVRKSAQYLEEITQTISIHFLVDRHINCRSKIF
YLLPSSILNNLQTYSHWITSAIHEYQQSKAKIENQNQNKIRMLPNLNISIERLLAKVGIYTVTDLKATGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=643412 L0F67_RS02340 WP_254240751.1 472353..472922(+) (sxy/tfoX) [Actinobacillus suis strain D20_277]
ATGAAATACACAACAAAGGAGTTAGAAAGACTTAAAGCGCTATTGTCCCCTCTCGGGGAGGTGACCTTTAAGCCTTATTT
TTCATTCTTAGGTATCTTTAAAAACGATACCATGTTTGCCCTCTACAAAGATCAACATTTATATGTACGCAAATCAGCCC
AATATTTAGAAGAAATAACTCAAACAATATCGATTCATTTTCTGGTTGATCGTCATATCAACTGTCGTTCCAAAATATTT
TATCTTCTTCCTTCCTCAATTCTTAACAACCTACAAACTTACTCTCACTGGATCACTTCAGCCATTCACGAATATCAACA
ATCTAAAGCAAAAATTGAAAATCAAAATCAAAACAAAATTCGTATGTTACCAAACTTAAATATCAGTATTGAGAGATTAT
TGGCTAAAGTCGGTATTTATACAGTAACAGATTTAAAAGCGACAGGTGCTATTAACGTTTTTGTACGTTTAATCCAGCAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAATAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-104)

TfoX C-terminal domain (TfoX_C)

(117-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

100

100

1
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

63.021

100

0.64
  sxy/tfoX Glaesserella parasuis strain SC1401

38.421

100

0.386