Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   LOD78_RS03215 Genome accession   NZ_CP090522
Coordinates   622241..623590 (+) Length   449 a.a.
NCBI ID   WP_274505716.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 617241..628590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS03190 (LOD78_03175) - 618340..618999 (-) 660 WP_274505713.1 amino acid ABC transporter permease -
  LOD78_RS03195 (LOD78_03180) - 619014..619712 (-) 699 WP_172036401.1 amino acid ABC transporter permease -
  LOD78_RS03200 (LOD78_03185) - 619727..620566 (-) 840 WP_274505714.1 transporter substrate-binding domain-containing protein -
  LOD78_RS03205 (LOD78_03190) - 620576..621337 (-) 762 WP_274505715.1 amino acid ABC transporter ATP-binding protein -
  LOD78_RS03210 (LOD78_03195) micA 621544..622248 (+) 705 WP_174845892.1 response regulator YycF Regulator
  LOD78_RS03215 (LOD78_03200) micB 622241..623590 (+) 1350 WP_274505716.1 cell wall metabolism sensor histidine kinase VicK Regulator
  LOD78_RS03220 (LOD78_03205) vicX 623597..624400 (+) 804 WP_171988530.1 MBL fold metallo-hydrolase Regulator
  LOD78_RS03225 (LOD78_03210) pbp2b 624679..626751 (+) 2073 WP_274505717.1 penicillin-binding protein PBP2B -
  LOD78_RS03230 (LOD78_03215) recR 626760..627356 (+) 597 WP_172036408.1 recombination mediator RecR -
  LOD78_RS03235 (LOD78_03220) - 627465..628511 (+) 1047 WP_274505718.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51127.48 Da        Isoelectric Point: 4.5677

>NTDB_id=643175 LOD78_RS03215 WP_274505716.1 622241..623590(+) (micB) [Streptococcus parasuis strain SS17]
MINQLRYLITTAEFWFVVILIGFLMALTVLLIENYRDNKQIQLLNKKVGDLIDGNYSDVLDLRGSPEITEMANSLNDLSE
VIRLTHDHLEQEKIRLSSILSYMSDGVIATDRIGRIIMVNDMAQKQLGLKDHKQEQYFLLDVLELQDQYSLRELLSQTPE
IVLEKVNENQELLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGEMDVELINFTAFITFILNRFDQMRNSDVGKTYAIIRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGNITFSMKTTDSQLILSISDEGLGIPKADLPKIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWEEVAEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=643175 LOD78_RS03215 WP_274505716.1 622241..623590(+) (micB) [Streptococcus parasuis strain SS17]
ATGATTAATCAATTACGCTATCTAATTACAACAGCTGAATTTTGGTTTGTTGTTATTTTGATCGGCTTTCTAATGGCGTT
GACAGTATTGTTAATAGAAAACTATCGTGACAATAAGCAGATTCAATTACTCAATAAAAAAGTTGGCGACTTGATAGATG
GTAATTACTCTGATGTATTGGATTTGCGAGGAAGTCCAGAGATTACTGAAATGGCAAATTCACTGAATGATTTGTCAGAA
GTAATCCGTTTAACGCACGATCACCTAGAACAAGAAAAAATCCGGCTCAGTTCCATTCTTTCCTACATGAGTGATGGAGT
CATTGCTACAGATCGTATTGGCCGAATTATTATGGTCAATGATATGGCGCAGAAACAACTGGGGTTAAAAGATCATAAAC
AGGAGCAATATTTTTTACTTGATGTTCTAGAACTTCAAGACCAATATAGTCTTCGTGAGTTGTTATCTCAAACACCTGAA
ATCGTCTTAGAAAAAGTTAATGAGAATCAAGAATTACTGACCTTACGAGCTAATTTTGCAACGATTAGGAGTGAAAGTGG
CCTCATATCAGGGTTGGTTGTTGTCCTACATGATATGACGGAGCAGGCCAAGGAGGAACGTGAGCGCAGACTGTTTGTTT
CTAATGTCAGTCACGAATTGCGTACACCGTTGACCTCGGTTAAATCATATTTGGAAGCCTTAGATGAGGGAGCTCTGACC
GAATCGGTTGCCCCAAGTTTTGTCAAGGTATCCTTAGATGAAACCAACCGGATGATGCGGATGATTACAGATCTTTTAAG
TTTATCTCGCATTGATAATCAGGTTGGAGAGATGGATGTAGAGTTAATCAATTTTACAGCCTTTATCACTTTTATCTTGA
ATCGCTTTGATCAGATGAGGAATTCTGATGTTGGTAAGACCTACGCTATTATTCGTGATTACCAGATTAGTCCAATTTGG
GTTGAAATTGATACCGATAAGATGACGCAGGTACTGGATAATATTTTGAATAATGCTATCAAGTATTCTCCAGATGGGGG
AAACATTACCTTTAGTATGAAAACGACAGATAGTCAGCTTATTCTTTCTATTTCAGATGAGGGTTTGGGAATTCCTAAAG
CTGATTTACCTAAAATATTTGACCGTTTCTATCGAGTTGATAAAGCGCGTTCGAGAGCCCAAGGAGGCACAGGTTTAGGT
TTGGCGATTGCAAAAGAGATTGTAAAGCAACACAAAGGTTTCATTTGGGCTAAAAGTGAGTATGGACATGGTTCGACATT
TACGATTGTCTTACCATATAGTAAGGATATTGCACTGGATGAGTGGGAAGAGGTTGCTGAGGAAGAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

PAS fold (PAS)

(96-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

69.037

97.105

0.67
  vicK Streptococcus mutans UA159

69.479

89.755

0.624