Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LOD78_RS03220 Genome accession   NZ_CP090522
Coordinates   623597..624400 (+) Length   267 a.a.
NCBI ID   WP_171988530.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 618597..629400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS03195 (LOD78_03180) - 619014..619712 (-) 699 WP_172036401.1 amino acid ABC transporter permease -
  LOD78_RS03200 (LOD78_03185) - 619727..620566 (-) 840 WP_274505714.1 transporter substrate-binding domain-containing protein -
  LOD78_RS03205 (LOD78_03190) - 620576..621337 (-) 762 WP_274505715.1 amino acid ABC transporter ATP-binding protein -
  LOD78_RS03210 (LOD78_03195) micA 621544..622248 (+) 705 WP_174845892.1 response regulator YycF Regulator
  LOD78_RS03215 (LOD78_03200) micB 622241..623590 (+) 1350 WP_274505716.1 cell wall metabolism sensor histidine kinase VicK Regulator
  LOD78_RS03220 (LOD78_03205) vicX 623597..624400 (+) 804 WP_171988530.1 MBL fold metallo-hydrolase Regulator
  LOD78_RS03225 (LOD78_03210) pbp2b 624679..626751 (+) 2073 WP_274505717.1 penicillin-binding protein PBP2B -
  LOD78_RS03230 (LOD78_03215) recR 626760..627356 (+) 597 WP_172036408.1 recombination mediator RecR -
  LOD78_RS03235 (LOD78_03220) - 627465..628511 (+) 1047 WP_274505718.1 D-alanine--D-alanine ligase -
  LOD78_RS03240 (LOD78_03225) - 628624..629004 (+) 381 WP_171988533.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29624.57 Da        Isoelectric Point: 5.3289

>NTDB_id=643176 LOD78_RS03220 WP_171988530.1 623597..624400(+) (vicX) [Streptococcus parasuis strain SS17]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTNKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=643176 LOD78_RS03220 WP_171988530.1 623597..624400(+) (vicX) [Streptococcus parasuis strain SS17]
ATGATCGGAACAGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGGAAAAAAATCACTAGTCTTTTGGCAGAAATTGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTTTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCGCCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTGGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGCTTTATGAAAGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCATATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCAATAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACGGCGACTGTGTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772