Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   LOD78_RS03160 Genome accession   NZ_CP090522
Coordinates   611643..612644 (+) Length   333 a.a.
NCBI ID   WP_172036444.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 606643..617644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS03145 (LOD78_03130) - 607863..608720 (-) 858 WP_274505709.1 DUF975 family protein -
  LOD78_RS03150 (LOD78_03135) tgt 608988..610130 (+) 1143 WP_274505710.1 tRNA guanosine(34) transglycosylase Tgt -
  LOD78_RS03155 (LOD78_03140) - 610352..611437 (-) 1086 WP_171988520.1 Xaa-Pro peptidase family protein -
  LOD78_RS03160 (LOD78_03145) ccpA 611643..612644 (+) 1002 WP_172036444.1 catabolite control protein A Regulator
  LOD78_RS03165 (LOD78_03150) - 612761..613804 (+) 1044 WP_274505711.1 glycosyltransferase family 4 protein -
  LOD78_RS03170 (LOD78_03155) - 613825..615138 (+) 1314 WP_174845888.1 glycosyltransferase family 4 protein -
  LOD78_RS03175 (LOD78_03160) - 615153..615527 (+) 375 WP_171988523.1 hypothetical protein -
  LOD78_RS03180 (LOD78_03165) - 615791..616162 (+) 372 Protein_587 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36790.81 Da        Isoelectric Point: 5.5299

>NTDB_id=643173 LOD78_RS03160 WP_172036444.1 611643..612644(+) (ccpA) [Streptococcus parasuis strain SS17]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASSDAVKLLAKNNKKIAFVSGPLVDDINGKVRFSGYKEGLQANGLEFNEGLVFESKYKYEEGYVLAERVLNAG
ATAAYIAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=643173 LOD78_RS03160 WP_172036444.1 611643..612644(+) (ccpA) [Streptococcus parasuis strain SS17]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAGGAAAACACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCCAATGCCTATTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTTGTTAATACATTGTTTTCTAAGCAAGTCGATGGTATTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCAGAATTTTCGCGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAGCTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATCGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAGTTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAATGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGTCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATATTGCTGAAGATGAAATCGCTGCCGGTTTGTTAAATGGTATCAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATCGGCGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

100

0.796
  ccpA Streptococcus pneumoniae D39

78.679

100

0.787
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.399

0.577