Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOD78_RS02080 Genome accession   NZ_CP090522
Coordinates   393399..393893 (+) Length   164 a.a.
NCBI ID   WP_171989336.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 388399..398893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS02055 (LOD78_02045) trpA 389428..390234 (+) 807 WP_274505616.1 tryptophan synthase subunit alpha -
  LOD78_RS02060 (LOD78_02050) - 390641..391489 (+) 849 WP_274505617.1 HAD family hydrolase -
  LOD78_RS02065 (LOD78_02055) - 391553..391882 (+) 330 Protein_364 family 1 glycosylhydrolase -
  LOD78_RS02070 (LOD78_02060) - 391966..392955 (+) 990 WP_171989334.1 lipoate--protein ligase -
  LOD78_RS02075 (LOD78_02065) rpsF 393097..393387 (+) 291 WP_171989335.1 30S ribosomal protein S6 -
  LOD78_RS02080 (LOD78_02070) ssb 393399..393893 (+) 495 WP_171989336.1 single-stranded DNA-binding protein Machinery gene
  LOD78_RS02085 (LOD78_02075) rpsR 393926..394165 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  LOD78_RS02090 (LOD78_02080) - 394486..395142 (-) 657 WP_274505618.1 DUF1129 family protein -
  LOD78_RS02095 (LOD78_02085) - 395158..396102 (-) 945 WP_171989337.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18129.89 Da        Isoelectric Point: 4.7294

>NTDB_id=643169 LOD78_RS02080 WP_171989336.1 393399..393893(+) (ssb) [Streptococcus parasuis strain SS17]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=643169 LOD78_RS02080 WP_171989336.1 393399..393893(+) (ssb) [Streptococcus parasuis strain SS17]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGGGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGACAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTTTTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGAGGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTTGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366