Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LOD78_RS00430 Genome accession   NZ_CP090522
Coordinates   77613..78767 (+) Length   384 a.a.
NCBI ID   WP_171989010.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72613..83767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS00415 (LOD78_00410) ruvA 74094..74684 (+) 591 WP_171989013.1 Holliday junction branch migration protein RuvA -
  LOD78_RS00420 (LOD78_00415) - 75774..76343 (+) 570 WP_274505495.1 DNA-3-methyladenine glycosylase I -
  LOD78_RS00425 (LOD78_00420) cinA 76380..77561 (+) 1182 WP_274505496.1 competence/damage-inducible protein A Machinery gene
  LOD78_RS00430 (LOD78_00425) recA 77613..78767 (+) 1155 WP_171989010.1 recombinase RecA Machinery gene
  LOD78_RS00435 (LOD78_00430) spx 78981..79379 (+) 399 WP_024392835.1 transcriptional regulator Spx -
  LOD78_RS00440 (LOD78_00435) - 79489..79755 (+) 267 WP_274505497.1 IreB family regulatory phosphoprotein -
  LOD78_RS00445 (LOD78_00440) ruvX 79755..80174 (+) 420 WP_130554426.1 Holliday junction resolvase RuvX -
  LOD78_RS00450 (LOD78_00445) - 80186..80506 (+) 321 WP_024392832.1 DUF1292 domain-containing protein -
  LOD78_RS00455 (LOD78_00450) - 80782..81330 (+) 549 WP_174846502.1 nucleotidyltransferase family protein -
  LOD78_RS00460 (LOD78_00455) comX/sigX 81512..81982 (+) 471 WP_024392830.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41235.93 Da        Isoelectric Point: 4.7333

>NTDB_id=643160 LOD78_RS00430 WP_171989010.1 77613..78767(+) (recA) [Streptococcus parasuis strain SS17]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDQKDQNVGKETKVKIVKNKVAPPFKEAIVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPVIFDEIDRKIRIHYGLIEADEEQEVVEAEENTIAVEDIQDVVLDLDGGIELED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=643160 LOD78_RS00430 WP_171989010.1 77613..78767(+) (recA) [Streptococcus parasuis strain SS17]
TTGGCTAAGAAACCAGGAAAAAAACTAGAAGATATTACAAAAAAATTTGGAGATGAACGTAAAAAAGCGCTGGATGATGC
ACTGAAATCTATCGAAAAAGATTTTGGTAAGGGAGCTGTCATGCGTCTCGGTGAACGTGCAGAGCAAAAGGTTCAAGTTA
TGAGCTCAGGAAGTCTGTCTATTGATATTGCGCTTGGGGCAGGTGGTTATCCCAAAGGGCGTATCATTGAAATTTATGGT
CCAGAAAGTTCAGGTAAGACAACAGTTGCTCTTCATGCTGTGGCTCAAGCGCAGAAAGAAGGTGGAATTGCAGCCTTTAT
TGATGCAGAACATGCTTTGGATCCAGCCTATGCAGCAGCCCTAGGGGTAAATATTGATGAATTACTTTTGTCGCAACCAG
ACTCAGGTGAACAAGGTCTTGAGATTGCAGGTAAGTTGATTGACTCTGGCGCGGTTGACTTAGTTGTCGTTGACTCTGTA
GCAGCCCTTGTACCTCGTGCAGAAATTGATGGTGATATTGGTGATAGTCACGTAGGTTTGCAAGCACGCATGATGAGTCA
GGCTATGCGTAAGTTGTCAGCTTCTATCAACAAGACCAAGACAATTGCTATCTTTATCAACCAGTTACGTGAAAAAGTTG
GGGTGATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCTCTTAAGTTCTATGCATCTGTTCGTATGGATGTCCGC
GGAAATACGCAGATCAAAGGTACTGGTGATCAAAAAGATCAAAACGTTGGTAAGGAAACCAAGGTCAAGATTGTGAAGAA
TAAGGTAGCTCCTCCGTTTAAGGAAGCTATCGTTGAAATCATGTATGGAGAGGGAATTTCTCGCACAGGTGAATTGATCG
AGATCGGTAGCAACCTTGGTATTATTCAAAAAGCAGGTGCCTGGTATTCTTATAATGGAGAAAAAATCGGACAAGGCTCT
GAAAATGCTAAGAAATTCTTGGCAGACAATCCAGTAATCTTTGATGAAATCGACCGTAAGATTCGTATTCACTATGGTTT
GATTGAAGCGGATGAAGAACAAGAAGTAGTGGAAGCAGAAGAAAATACGATTGCTGTTGAAGATATACAAGATGTTGTAC
TTGATCTAGATGGTGGGATTGAGTTAGAAGATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.198

100

0.862
  recA Streptococcus pyogenes NZ131

85.677

100

0.857
  recA Streptococcus mitis NCTC 12261

83.377

100

0.836
  recA Streptococcus pneumoniae D39

82.902

100

0.833
  recA Streptococcus pneumoniae Rx1

82.902

100

0.833
  recA Streptococcus pneumoniae R6

82.902

100

0.833
  recA Streptococcus pneumoniae TIGR4

82.902

100

0.833
  recA Streptococcus mitis SK321

82.857

100

0.831
  recA Lactococcus lactis subsp. cremoris KW2

75.071

91.927

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

67.262

87.5

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

85.677

0.589
  recA Neisseria gonorrhoeae MS11

61.934

86.198

0.534
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.198

0.534
  recA Neisseria gonorrhoeae MS11

61.934

86.198

0.534
  recA Acinetobacter baumannii D1279779

62.883

84.896

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

86.979

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

84.635

0.523
  recA Acinetobacter baylyi ADP1

61.846

84.635

0.523
  recA Vibrio cholerae strain A1552

61.846

84.635

0.523
  recA Glaesserella parasuis strain SC1401

60.923

84.635

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.115

0.51
  recA Pseudomonas stutzeri DSM 10701

60

84.635

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.552

0.5
  recA Helicobacter pylori strain NCTC11637

58.282

84.896

0.495
  recA Helicobacter pylori 26695

58.282

84.896

0.495