Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV/pilI   Type   Regulator
Locus tag   OHM05_RS06875 Genome accession   NZ_CP107272
Coordinates   1317701..1318315 (-) Length   204 a.a.
NCBI ID   WP_012503479.1    Uniprot ID   B4RKG4
Organism   Neisseria gonorrhoeae strain 1130991     
Function   repress natural transformation; antagonize ComP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1312701..1323315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM05_RS06840 (OHM05_06840) dapC 1312714..1313901 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  OHM05_RS06845 (OHM05_06845) dut 1313973..1314425 (-) 453 WP_003701071.1 dUTP diphosphatase -
  OHM05_RS06850 (OHM05_06850) - 1314591..1315302 (+) 712 Protein_1317 AzlC family ABC transporter permease -
  OHM05_RS06855 (OHM05_06855) - 1315299..1315607 (+) 309 WP_003706588.1 AzlD family protein -
  OHM05_RS06860 (OHM05_06860) pilL 1315677..1316153 (-) 477 WP_263946612.1 PilX family type IV pilin Machinery gene
  OHM05_RS06865 (OHM05_06865) pilK 1316155..1316763 (-) 609 WP_047921847.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHM05_RS06870 (OHM05_06870) pilJ 1316742..1317704 (-) 963 WP_047921846.1 PilW family protein Machinery gene
  OHM05_RS06875 (OHM05_06875) pilV/pilI 1317701..1318315 (-) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  OHM05_RS06880 (OHM05_06880) pilH 1318347..1319009 (-) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHM05_RS11975 - 1319160..1319272 (+) 113 Protein_1324 IS5/IS1182 family transposase -
  OHM05_RS06885 (OHM05_06885) dnaB 1319266..1320669 (-) 1404 WP_012503477.1 replicative DNA helicase -
  OHM05_RS06890 (OHM05_06890) - 1320833..1321414 (+) 582 WP_003690895.1 superoxide dismutase -
  OHM05_RS06895 (OHM05_06895) - 1321646..1322155 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  OHM05_RS06900 (OHM05_06900) - 1322485..1322817 (-) 333 WP_003687908.1 hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22099.99 Da        Isoelectric Point: 4.9673

>NTDB_id=643108 OHM05_RS06875 WP_012503479.1 1317701..1318315(-) (pilV/pilI) [Neisseria gonorrhoeae strain 1130991]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGPYTPTPSGGDFKLNNNNLISKKDLAKAQLDRFDYELRNALPDAVAIHYAVCKDSSGGAPTLSGGTFSPNCDNKA
NGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGHE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=643108 OHM05_RS06875 WP_012503479.1 1317701..1318315(-) (pilV/pilI) [Neisseria gonorrhoeae strain 1130991]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGCCGTACACCCCCACTCCCTCTGGCGGCGATTTCAAGCTTAATAATAATAATTTGATAAGTAA
GAAGGATTTGGCAAAAGCCCAGTTGGACAGGTTCGATTATGAATTGAGAAACGCCTTGCCGGATGCGGTAGCTATTCATT
ACGCCGTCTGCAAGGATTCGTCGGGTGGCGCGCCGACATTGTCCGGCGGTACTTTTTCTCCAAATTGCGATAATAAGGCA
AACGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGT
GAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCATGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV/pilI Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria meningitidis 8013

84.135

100

0.858