Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   OHM05_RS06860 Genome accession   NZ_CP107272
Coordinates   1315677..1316153 (-) Length   158 a.a.
NCBI ID   WP_263946612.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1130991     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1310677..1321153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM05_RS06835 (OHM05_06835) yaaA 1311779..1312558 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  OHM05_RS06840 (OHM05_06840) dapC 1312714..1313901 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  OHM05_RS06845 (OHM05_06845) dut 1313973..1314425 (-) 453 WP_003701071.1 dUTP diphosphatase -
  OHM05_RS06850 (OHM05_06850) - 1314591..1315302 (+) 712 Protein_1317 AzlC family ABC transporter permease -
  OHM05_RS06855 (OHM05_06855) - 1315299..1315607 (+) 309 WP_003706588.1 AzlD family protein -
  OHM05_RS06860 (OHM05_06860) pilL 1315677..1316153 (-) 477 WP_263946612.1 PilX family type IV pilin Machinery gene
  OHM05_RS06865 (OHM05_06865) pilK 1316155..1316763 (-) 609 WP_047921847.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHM05_RS06870 (OHM05_06870) pilJ 1316742..1317704 (-) 963 WP_047921846.1 PilW family protein Machinery gene
  OHM05_RS06875 (OHM05_06875) pilV/pilI 1317701..1318315 (-) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  OHM05_RS06880 (OHM05_06880) pilH 1318347..1319009 (-) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHM05_RS11975 - 1319160..1319272 (+) 113 Protein_1324 IS5/IS1182 family transposase -
  OHM05_RS06885 (OHM05_06885) dnaB 1319266..1320669 (-) 1404 WP_012503477.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17585.43 Da        Isoelectric Point: 9.9561

>NTDB_id=643105 OHM05_RS06860 WP_263946612.1 1315677..1316153(-) (pilL) [Neisseria gonorrhoeae strain 1130991]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLVGYK
MNPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 477 bp        

>NTDB_id=643105 OHM05_RS06860 WP_263946612.1 1315677..1316153(-) (pilL) [Neisseria gonorrhoeae strain 1130991]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGTAGGCTATAAG
ATGAATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGT
CGGCGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATG
CCACTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.139

100

0.911
  pilX Neisseria meningitidis 8013

84.81

100

0.848