Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | IHC92_RS04470 | Genome accession | NZ_CP090487 |
| Coordinates | 888006..888266 (+) | Length | 86 a.a. |
| NCBI ID | WP_370466065.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. damselae strain AS-15-3942-9 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 883006..893266
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHC92_RS04460 (IHC92_04460) | hupB | 885294..885566 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| IHC92_RS04465 (IHC92_04465) | ppiD | 885917..887815 (+) | 1899 | WP_068969096.1 | peptidylprolyl isomerase | - |
| IHC92_RS04470 (IHC92_04470) | comEA | 888006..888266 (+) | 261 | WP_370466065.1 | ComEA family DNA-binding protein | Machinery gene |
| IHC92_RS04475 (IHC92_04475) | - | 888351..888689 (-) | 339 | WP_086957111.1 | DUF1971 domain-containing protein | - |
| IHC92_RS04480 (IHC92_04480) | rrtA | 888776..889333 (-) | 558 | WP_106223252.1 | rhombosortase | - |
| IHC92_RS04485 (IHC92_04485) | - | 889343..889960 (+) | 618 | WP_068969098.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| IHC92_RS04490 (IHC92_04490) | - | 890088..891416 (-) | 1329 | WP_106339854.1 | anti-phage deoxyguanosine triphosphatase | - |
| IHC92_RS04495 (IHC92_04495) | yfbR | 891416..892000 (-) | 585 | WP_237035176.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9485.96 Da Isoelectric Point: 5.1351
>NTDB_id=642805 IHC92_RS04470 WP_370466065.1 888006..888266(+) (comEA) [Photobacterium damselae subsp. damselae strain AS-15-3942-9]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=642805 IHC92_RS04470 WP_370466065.1 888006..888266(+) (comEA) [Photobacterium damselae subsp. damselae strain AS-15-3942-9]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGTATTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGTATTGGCCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGTATTGGTCCCTCTACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |