Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NDN57_RS02345 Genome accession   NZ_CP107264
Coordinates   453727..454338 (+) Length   203 a.a.
NCBI ID   WP_033911077.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10231     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448727..459338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN57_RS02320 (NDN57_002320) - 449188..449769 (-) 582 WP_229930487.1 superoxide dismutase -
  NDN57_RS02325 (NDN57_002325) dnaB 449933..451339 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDN57_RS02330 (NDN57_002330) pilH 451493..452158 (+) 666 WP_003699624.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDN57_RS02335 (NDN57_002335) pilV 452190..452801 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Regulator
  NDN57_RS02340 (NDN57_002340) pilJ 452798..453748 (+) 951 WP_229930486.1 PilW family protein Machinery gene
  NDN57_RS02345 (NDN57_002345) pilK 453727..454338 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDN57_RS02350 (NDN57_002350) pilL 454340..454825 (+) 486 WP_229930488.1 PilX family type IV pilin Machinery gene
  NDN57_RS02355 (NDN57_002355) - 454895..455203 (-) 309 WP_025456177.1 AzlD family protein -
  NDN57_RS02360 (NDN57_002360) - 455200..455910 (-) 711 Protein_463 AzlC family ABC transporter permease -
  NDN57_RS02365 (NDN57_002365) dut 456076..456528 (+) 453 WP_229930485.1 dUTP diphosphatase -
  NDN57_RS02370 (NDN57_002370) dapC 456604..457791 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  NDN57_RS02375 (NDN57_002375) yaaA 457947..458726 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22068.97 Da        Isoelectric Point: 7.5813

>NTDB_id=642807 NDN57_RS02345 WP_033911077.1 453727..454338(+) (pilK) [Neisseria gonorrhoeae strain 10231]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=642807 NDN57_RS02345 WP_033911077.1 453727..454338(+) (pilK) [Neisseria gonorrhoeae strain 10231]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956