Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   LXM91_RS17960 Genome accession   NZ_CP090477
Coordinates   3642316..3642435 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain W0101     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3637316..3647435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM91_RS17940 (LXM91_17940) - 3637666..3638178 (+) 513 Protein_3485 bacteriocin biosynthesis protein AlbG -
  LXM91_RS17945 (LXM91_17945) - 3638185..3639561 (-) 1377 WP_039063793.1 YncE family protein -
  LXM91_RS17950 (LXM91_17950) - 3639601..3640956 (-) 1356 WP_039253463.1 YncE family protein -
  LXM91_RS17955 (LXM91_17955) rapF 3641187..3642332 (+) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  LXM91_RS17960 (LXM91_17960) phrF 3642316..3642435 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LXM91_RS17965 (LXM91_17965) - 3642632..3642835 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LXM91_RS17970 (LXM91_17970) - 3642849..3643052 (+) 204 WP_007407641.1 hypothetical protein -
  LXM91_RS17975 (LXM91_17975) - 3643087..3643272 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LXM91_RS17980 (LXM91_17980) - 3643458..3643739 (+) 282 WP_007407643.1 hypothetical protein -
  LXM91_RS17985 (LXM91_17985) - 3643783..3644295 (+) 513 WP_039253458.1 stage II sporulation protein M -
  LXM91_RS17990 (LXM91_17990) - 3644886..3645104 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  LXM91_RS17995 (LXM91_17995) speB 3645272..3646144 (-) 873 WP_007407646.1 agmatinase -
  LXM91_RS18000 (LXM91_18000) speE 3646203..3647033 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=642735 LXM91_RS17960 WP_015240778.1 3642316..3642435(+) (phrF) [Bacillus amyloliquefaciens strain W0101]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=642735 LXM91_RS17960 WP_015240778.1 3642316..3642435(+) (phrF) [Bacillus amyloliquefaciens strain W0101]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
AAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462