Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LY387_RS01335 Genome accession   NZ_CP090438
Coordinates   294727..295359 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio maritimus strain BH16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 289727..300359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS01315 - 289971..291182 (+) 1212 WP_234495075.1 aspartate aminotransferase family protein -
  LY387_RS01320 astA 291264..292283 (+) 1020 WP_042477216.1 arginine N-succinyltransferase -
  LY387_RS01325 astD 292386..293852 (+) 1467 WP_234495076.1 succinylglutamate-semialdehyde dehydrogenase -
  LY387_RS01330 - 293863..294654 (+) 792 WP_234495077.1 DUF1338 domain-containing protein -
  LY387_RS01335 crp 294727..295359 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  LY387_RS01340 - 295603..296472 (-) 870 WP_042477219.1 phosphoribulokinase -
  LY387_RS01345 - 296600..296812 (-) 213 WP_234495078.1 YheU family protein -
  LY387_RS01350 - 296886..297863 (-) 978 WP_234495079.1 hydrolase -
  LY387_RS01355 - 297860..299248 (-) 1389 WP_234495080.1 PLP-dependent aminotransferase family protein -
  LY387_RS01360 - 299376..299972 (+) 597 WP_112461379.1 LysE family translocator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=642429 LY387_RS01335 WP_004410522.1 294727..295359(-) (crp) [Vibrio maritimus strain BH16]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=642429 LY387_RS01335 WP_004410522.1 294727..295359(-) (crp) [Vibrio maritimus strain BH16]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACGTTAGAGTGGTTCCTTTCACACTGCCACATTCACAAGTATCCATCGAA
GAGCACGCTTATCCACGCGGGCGAGAAAGCAGAGACGCTTTACTACATCGTAAAAGGTTCTGTAGCGGTACTTATCAAAG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTTAACCAAGGTGACTTCATTGGTGAACTAGGCCTGTTCGAAGAAGAC
CAAGAACGTACAGCATGGGTACGAGCAAAATCACCTTGTGAAGTTGCGGAAATCTCATTCAAGAAGTTCCGTCAGCTTAT
CCAAGTTAACCCAGACATTCTAATGCGCTTATCTGCTCAGATGGCAAGTCGTCTACAAGTGACTAGCCAAAAAGTAGGTG
ACCTAGCGTTCCTAGACGTAACGGGTCGTATTGCACAGACGCTACTAAACCTAGCGAAACAACCAGATGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAAATCGTTGGTTGTTCTCGTGAAACAGTAGGTCGTAT
TCTTAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACTATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467