Detailed information NTG0642295

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LZ605_RS20310
• Genome accession: NZ_CP090423
• Coordinates: 4358207..4359580 (-)
• Length: 457 a.a.
• NCBI ID: WP_249843091.1
• Uniprot ID: -
• Organism: Stenotrophomonas maltophilia strain GYH
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4353207..4364580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ605_RS20300 (LZ605_20300)	-	4353327..4356383 (+)	3057	WP_249843089.1	fused MFS/spermidine synthase	-
LZ605_RS20305 (LZ605_20305)	pilB	4356397..4358124 (+)	1728	WP_249843090.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LZ605_RS20310 (LZ605_20310)	pilR	4358207..4359580 (-)	1374	WP_249843091.1	sigma-54 dependent transcriptional regulator	Regulator
LZ605_RS20315 (LZ605_20315)	-	4359641..4361254 (-)	1614	WP_249843092.1	ATP-binding protein	-
LZ605_RS20320 (LZ605_20320)	sucC	4361637..4362806 (+)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
LZ605_RS20325 (LZ605_20325)	sucD	4362828..4363703 (+)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49393.63 Da
• Isoelectric Point: 6.3580

>NTDB_id=642295 LZ605_RS20310 WP_249843091.1 4358207..4359580(-) (pilR) [Stenotrophomonas maltophilia strain GYH]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNADRPAPGPSAEQGARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRGTPLLAPSALEALAQYSFPGNVRELENILERALALAEEDCIGADDLRLPQHSPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=642295 LZ605_RS20310 WP_249843091.1 4358207..4359580(-) (pilR) [Stenotrophomonas maltophilia strain GYH]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTCCTGACGCTTGGCCGTAT
GGGGCTGCGCATCAGTACCGCGGCCAACCTTGCCGAGGCGCGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAACGGCATCGAGCTGGTGAGTGAGATTGCCCAGCACTACCCACGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGGCTGGTCAAGCACGCGCTGGAACTCAACAACGCCGACCGCCCCGCACCCGGCCCCAGTG
CCGAACAGGGCGCGCGGCTGCTGGGCGCCTCGCCGGCGATGGACGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGTGAATCCGGGGTCGGCAAGGAGCTGGTGGCGCGCACCATCCACGCCCAGGGCGCACG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCGGGCGAACTGATGGAAAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCGCGGTCGGCGCCGC
CAACGAAGAACCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGATGGCCGCTTCC
GCCACGACCTGTATTACCGCATCAATGTGATCGAGCTGAAGGTGCCGCCGCTGCGTGAGCGCCGCCAGGATCTGCCGGAG
CTGGCCGCAGCGGTATTGGCGCGCCTGGCCCGCAGCCATGGACGCGGCACGCCACTGCTGGCGCCTTCAGCCCTGGAGGC
GCTGGCCCAGTACAGCTTCCCCGGTAACGTACGCGAACTGGAGAACATCCTCGAACGCGCGCTGGCGCTGGCCGAAGAAG
ACTGCATCGGTGCTGATGACCTGCGCCTGCCCCAGCATTCACCGCGCGCACCGGGCAGCGCCGCGCCGGCTGAAGCCGTG
GCCGACCTGCAACCCGGGAGCGCCGCCCTGCCCTCGTACATCGAGCAGCTCGAGCGCAGTGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCGGCACAGCTGGGCATCACCTTCCGTGCATTGCGATACAAGCTGAAAAAGC
TGGGCATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.377	99.781	0.632
pilR	Acinetobacter baumannii strain A118	47.732	100	0.484