Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LY388_RS06875 Genome accession   NZ_CP090387
Coordinates   299659..300291 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain GXFL1-4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 294659..305291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS06855 (LY388_06855) - 294809..296020 (+) 1212 WP_199358566.1 aspartate aminotransferase family protein -
  LY388_RS06860 (LY388_06860) astA 296160..297179 (+) 1020 WP_000962042.1 arginine N-succinyltransferase -
  LY388_RS06865 (LY388_06865) astD 297189..298646 (+) 1458 WP_199358565.1 succinylglutamate-semialdehyde dehydrogenase -
  LY388_RS06870 (LY388_06870) - 298789..299580 (+) 792 WP_000189091.1 DUF1338 domain-containing protein -
  LY388_RS06875 (LY388_06875) crp 299659..300291 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  LY388_RS06880 (LY388_06880) - 300534..301403 (-) 870 WP_001274667.1 phosphoribulokinase -
  LY388_RS06885 (LY388_06885) - 301500..301709 (-) 210 WP_001888622.1 YheU family protein -
  LY388_RS06890 (LY388_06890) - 301838..302827 (-) 990 WP_000627575.1 hydrolase -
  LY388_RS06895 (LY388_06895) - 302824..303309 (-) 486 WP_199358564.1 TIGR02444 family protein -
  LY388_RS06900 (LY388_06900) - 303310..305226 (-) 1917 WP_057563671.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=641916 LY388_RS06875 WP_000242749.1 299659..300291(-) (crp) [Vibrio cholerae strain GXFL1-4]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=641916 LY388_RS06875 WP_000242749.1 299659..300291(-) (crp) [Vibrio cholerae strain GXFL1-4]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467