Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LZG54_RS08960 Genome accession   NZ_CP090382
Coordinates   1876768..1877472 (+) Length   234 a.a.
NCBI ID   WP_004971566.1    Uniprot ID   A0AAP4HCD2
Organism   Acinetobacter towneri strain SCLZS30     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1871768..1882472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS08945 (LZG54_08960) - 1871793..1873076 (-) 1284 WP_234113724.1 DUF945 family protein -
  LZG54_RS08950 (LZG54_08965) clpB 1873305..1875884 (-) 2580 WP_131261353.1 ATP-dependent chaperone ClpB -
  LZG54_RS08955 (LZG54_08970) - 1876197..1876619 (-) 423 WP_070156041.1 OsmC family protein -
  LZG54_RS08960 (LZG54_08975) crp 1876768..1877472 (+) 705 WP_004971566.1 cAMP-activated global transcriptional regulator CRP Regulator
  LZG54_RS08965 (LZG54_08980) - 1877677..1878726 (+) 1050 WP_234113725.1 NADP(H)-dependent aldo-keto reductase -
  LZG54_RS08970 (LZG54_08985) - 1878827..1879609 (-) 783 WP_004971571.1 M48 family metallopeptidase -
  LZG54_RS08975 (LZG54_08990) - 1879766..1880074 (-) 309 WP_004971573.1 hypothetical protein -
  LZG54_RS08980 (LZG54_08995) - 1880312..1881631 (-) 1320 WP_004971574.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26333.90 Da        Isoelectric Point: 4.7168

>NTDB_id=641884 LZG54_RS08960 WP_004971566.1 1876768..1877472(+) (crp) [Acinetobacter towneri strain SCLZS30]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNESTDGNFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=641884 LZG54_RS08960 WP_004971566.1 1876768..1877472(+) (crp) [Acinetobacter towneri strain SCLZS30]
ATGACTTCAAACTTTTCACAGCTGAGCACTGATGCATTGTCCCCTGGACAACTGCCTGACTCAGTCAAAGCATTATTAAA
ACGTGCATACATCAACCGTTATCCAAAACGGACAACTATTGTTGATGCAGGGACTGAATCAAAATCGTTATATTTGATTT
TAAAAGGTTCAGTATCAATTATTCTTCGCGAAGATGATGATCGCGAAATTGTTGTGGCATATTTGAATCCAGGCGACTTT
TTTGGGGAAATGGGTCTGTTTGAATCGAATCCACAACGTACTGCAGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTACTTATGAAAACTTCCACGAACTCAGCAAACAATATCCTGACTTAAGCTATGCCGTTTTTGCACAGCTGGTACGTC
GTTTAAAAAATACTACACGTAAGGTAACTGACCTTGCCTTTATAGATGTGTCTGGTCGTATTGCACGTTGCTTGATTGAT
CTTTCTGCGCAACCAGAAGCCATGATTTTGCCAAACGGTCGTCAAATTCGTATTACACGCCAAGAAATTGGTCGTATTGT
CGGCTGTTCACGTGAAATGGTCGGGCGTGTTCTAAAAACACTTGAAGAACAAGGCATGATTGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCTTCTTTGGAGCAAAATGAATCCACTGATGGCAACTTTGATGACGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.88

100

0.919
  crp Vibrio cholerae strain A1552

47.317

87.607

0.415
  crp Haemophilus influenzae Rd KW20

47.692

83.333

0.397