Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   LZ178_RS00285 Genome accession   NZ_CP090375
Coordinates   68769..70397 (-) Length   542 a.a.
NCBI ID   WP_257241421.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD4SA108-1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63769..75397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ178_RS00250 (LZ178_00250) mecA 63922..65931 (+) 2010 WP_194376038.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  LZ178_RS00255 (LZ178_00255) - 65977..66360 (-) 384 WP_194376062.1 MaoC family dehydratase -
  LZ178_RS00260 (LZ178_00260) - 66351..66716 (+) 366 Protein_49 CDP-glycerol glycerophosphotransferase family protein -
  LZ178_RS00265 (LZ178_00265) - 66793..67014 (-) 222 WP_023604758.1 hypothetical protein -
  LZ178_RS00270 (LZ178_00270) - 67029..67538 (-) 510 WP_194376037.1 DUF1643 domain-containing protein -
  LZ178_RS00275 (LZ178_00275) - 67556..67867 (-) 312 WP_257241422.1 DUF960 domain-containing protein -
  LZ178_RS00280 (LZ178_00280) - 67954..68304 (-) 351 WP_218775036.1 SAUGI family uracil-DNA glycosylase inhibitor -
  LZ178_RS00285 (LZ178_00285) ccrB 68769..70397 (-) 1629 WP_257241421.1 recombinase family protein Machinery gene
  LZ178_RS00290 (LZ178_00290) ccrA 70419..71768 (-) 1350 WP_257241420.1 recombinase family protein Machinery gene
  LZ178_RS00295 (LZ178_00295) - 71956..73722 (-) 1767 WP_257241419.1 DUF927 domain-containing protein -
  LZ178_RS00300 (LZ178_00300) - 73722..74036 (-) 315 WP_257241418.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62670.46 Da        Isoelectric Point: 9.4557

>NTDB_id=641791 LZ178_RS00285 WP_257241421.1 68769..70397(-) (ccrB) [Staphylococcus aureus strain GD4SA108-1]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDNPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPECGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDIANQINQLKQQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=641791 LZ178_RS00285 WP_257241421.1 68769..70397(-) (ccrB) [Staphylococcus aureus strain GD4SA108-1]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAGCTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTCATGGGCCAAACCAGACGTGCACAAGAAGGCTACTATCAAGGGAAT
TTGCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAACGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAACCCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ACCTATTAACAGGTATTATTCACTGCCCAGAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGCAGTAACTTTCGAAACAAAGGTTCAAAAGTATGTTCTGCTAATAGCGT
TAGAGCCGATGTCATTGAGAAATACGTTATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGATATTGCAAACCAAATTAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTATTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.531

100

0.865