Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OGM39_RS23885 Genome accession   NZ_CP107162
Coordinates   4857976..4858566 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain R10     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4852976..4863566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM39_RS23870 (OGM39_23840) uhpT 4853616..4855007 (-) 1392 WP_000879199.1 hexose-6-phosphate:phosphate antiporter -
  OGM39_RS23875 (OGM39_23845) uhpC 4855145..4856464 (-) 1320 WP_001296565.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  OGM39_RS23880 (OGM39_23850) uhpB 4856474..4857976 (-) 1503 WP_001304997.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  OGM39_RS23885 (OGM39_23855) letA 4857976..4858566 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  OGM39_RS26285 - 4859050..4859910 (+) 861 Protein_4698 DUF6708 domain-containing protein -
  OGM39_RS23895 (OGM39_23865) ilvN 4859976..4860266 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  OGM39_RS23900 (OGM39_23870) ilvB 4860270..4861958 (-) 1689 WP_000168502.1 acetolactate synthase large subunit -
  OGM39_RS23905 (OGM39_23875) ivbL 4862064..4862162 (-) 99 WP_001312198.1 ilvB operon leader peptide IvbL -
  OGM39_RS23910 (OGM39_23880) ysdE 4862407..4862481 (-) 75 WP_211180519.1 protein YsdE -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=641791 OGM39_RS23885 WP_000633668.1 4857976..4858566(-) (letA) [Escherichia coli strain R10]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=641791 OGM39_RS23885 WP_000633668.1 4857976..4858566(-) (letA) [Escherichia coli strain R10]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTTCTAAGCCAGCTGCCGAAAGGCATGGCGACAATTATGCTCTCCGTT
CACGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACTGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCTGGTC
GCCAGGACCCGCTAACCAAACGCGAACGCCAGGTGGCAGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCGCCGAAAACAGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378