Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LN341_RS02020 Genome accession   NZ_CP090364
Coordinates   411725..412612 (-) Length   295 a.a.
NCBI ID   WP_234203941.1    Uniprot ID   -
Organism   Photobacterium sp. TLY01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406725..417612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN341_RS01995 (LN341_01995) secA 406832..409549 (+) 2718 WP_046220557.1 preprotein translocase subunit SecA -
  LN341_RS02000 (LN341_02000) mutT 409667..410065 (+) 399 WP_046220556.1 8-oxo-dGTP diphosphatase MutT -
  LN341_RS02005 (LN341_02005) yacG 410103..410306 (-) 204 WP_082095739.1 DNA gyrase inhibitor YacG -
  LN341_RS02010 (LN341_02010) zapD 410314..411078 (-) 765 WP_046220555.1 cell division protein ZapD -
  LN341_RS02015 (LN341_02015) coaE 411117..411728 (-) 612 WP_046220554.1 dephospho-CoA kinase -
  LN341_RS02020 (LN341_02020) pilD 411725..412612 (-) 888 WP_234203941.1 A24 family peptidase Machinery gene
  LN341_RS02025 (LN341_02025) - 412699..413934 (-) 1236 WP_234203942.1 type II secretion system F family protein -
  LN341_RS02030 (LN341_02030) pilB 413934..415634 (-) 1701 WP_234203943.1 GspE/PulE family protein Machinery gene
  LN341_RS02035 (LN341_02035) - 415636..416127 (-) 492 WP_046220638.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32229.59 Da        Isoelectric Point: 7.2367

>NTDB_id=641687 LN341_RS02020 WP_234203941.1 411725..412612(-) (pilD) [Photobacterium sp. TLY01]
MALLTYYPWLYPLAAAVFGLIAGSFLNVVILRLPVMMERQWRADCAECFPGHADIGPQPVFNLSVPASSCPHCQHKIRAW
ENIPVISWILLRGRCSQCKAKISARYPAIEILTALMALAVALVLPFSAWSLAVIGAGCTLIALTFIDIDKMLLPDQLTLP
LMWAGLLLALLDISPVSLESAVIGAMAGYLSLWSLYWVFKLLTGKEGMGYGDFKLLAALGAWAGWQLLPLIVLLSSLLGA
ICGIILLRMQHSDNEAGMQTPFSFGPYLALAGWIALLWGPPVLHWYVGTYLGYPL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=641687 LN341_RS02020 WP_234203941.1 411725..412612(-) (pilD) [Photobacterium sp. TLY01]
ATGGCGTTACTGACCTACTACCCCTGGCTTTACCCGCTTGCTGCTGCGGTTTTCGGCCTGATCGCCGGCAGCTTTCTGAA
TGTGGTCATCCTGCGCCTGCCCGTCATGATGGAAAGACAATGGCGCGCTGATTGCGCCGAGTGTTTTCCGGGCCATGCAG
ACATCGGCCCCCAGCCTGTCTTTAATCTCAGTGTCCCGGCCTCCAGCTGCCCGCACTGCCAACATAAGATCCGCGCCTGG
GAAAACATTCCTGTCATCAGCTGGATACTGCTTCGCGGTCGCTGCAGTCAGTGCAAAGCCAAAATCAGTGCCCGCTATCC
CGCGATTGAGATCCTGACGGCACTCATGGCACTGGCGGTCGCGCTGGTGTTGCCTTTCTCGGCCTGGAGTCTGGCGGTGA
TTGGCGCCGGTTGTACCCTGATCGCCCTGACCTTCATTGATATCGATAAAATGCTGCTGCCCGATCAGCTCACCCTGCCT
CTGATGTGGGCCGGCCTGCTGCTGGCCCTGCTGGATATCAGCCCGGTCAGCCTGGAATCTGCCGTGATTGGTGCCATGGC
CGGCTACCTGTCCCTCTGGAGCCTGTACTGGGTCTTCAAGCTGCTCACAGGCAAGGAAGGCATGGGCTATGGTGATTTCA
AGCTCCTGGCCGCTTTGGGCGCCTGGGCCGGATGGCAGCTGTTACCTTTGATTGTCCTGCTCTCTTCCTTGCTCGGCGCT
ATCTGTGGCATCATTTTGCTGCGTATGCAACACAGCGACAATGAAGCCGGTATGCAAACACCGTTTTCATTCGGTCCTTA
TCTTGCACTGGCTGGCTGGATAGCCCTGCTCTGGGGCCCCCCCGTGCTTCACTGGTATGTCGGAACATATTTAGGATACC
CATTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

63.051

100

0.631
  pilD Vibrio campbellii strain DS40M4

59.589

98.983

0.59
  pilD Acinetobacter baumannii D1279779

52.899

93.559

0.495
  pilD Acinetobacter nosocomialis M2

52.536

93.559

0.492
  pilD Neisseria gonorrhoeae MS11

49.813

90.508

0.451