Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LXN51_RS04910 Genome accession   NZ_CP090355
Coordinates   1037963..1039309 (+) Length   448 a.a.
NCBI ID   WP_085697522.1    Uniprot ID   -
Organism   Pseudomonas kribbensis strain H38E-23     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032963..1044309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN51_RS04885 (LXN51_04885) pgeF 1033166..1033900 (-) 735 WP_085703170.1 peptidoglycan editing factor PgeF -
  LXN51_RS04890 (LXN51_04890) rluD 1033897..1034859 (-) 963 WP_085703169.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LXN51_RS04895 (LXN51_04895) - 1035012..1036028 (+) 1017 WP_085697519.1 outer membrane protein assembly factor BamD -
  LXN51_RS04900 (LXN51_04900) - 1036154..1036387 (+) 234 WP_085703168.1 PP0621 family protein -
  LXN51_RS04905 (LXN51_04905) pilS 1036377..1037966 (+) 1590 WP_085703167.1 ATP-binding protein Regulator
  LXN51_RS04910 (LXN51_04910) pilR 1037963..1039309 (+) 1347 WP_085697522.1 sigma-54-dependent transcriptional regulator Regulator
  LXN51_RS04915 (LXN51_04915) thiO 1039381..1040481 (-) 1101 WP_085703166.1 glycine oxidase ThiO -
  LXN51_RS04920 (LXN51_04920) - 1040539..1040940 (-) 402 WP_039771691.1 type IV pilin protein -
  LXN51_RS04925 (LXN51_04925) - 1040956..1044048 (-) 3093 WP_085697524.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50047.48 Da        Isoelectric Point: 6.8298

>NTDB_id=641638 LXN51_RS04910 WP_085697522.1 1037963..1039309(+) (pilR) [Pseudomonas kribbensis strain H38E-23]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLHRETFALCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLASGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRMIEAEDLRLIEGNGTAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=641638 LXN51_RS04910 WP_085697522.1 1037963..1039309(+) (pilR) [Pseudomonas kribbensis strain H38E-23]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAAGCTCAGGCGCTGCTGCACCGCGAAACCTTCGCTCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAGCTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCG
GTCGCGATGATCACCGCCTACGGCAGCCTGGAAACGGCGATCAACGCTCTGAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTGGACCTGACGCGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCAGGCAATGTCTGCACTTCGA
TCGACCGGCGGTTGCTTGGCGACTCACCGCCGATGCGCAACTTGCGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTCTATATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCCCGTCTGATTCATGAACAGGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGTGGGGCGATTCCTTCAGAGTTGATGGAAAGCGAATTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCAGTGGAGGATAAACCGGGGCTGTTCCAGGCGGCCCATGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGTGCGACGCACAAGGACCTCGACGCGGAAGTGGCTGCCGAGCGTTTCCGTCAGG
ACCTGTATTACCGGCTGAACGTGATCGAGTTGCGTGTACCGTCTCTGCGCGAGCGTCGCGAGGACATCGAAGCGCTGGCC
GGCCATATGCTCAAGCGCCTGGCCAGTGGCACCGGGCAACCGGCGGCACGGCTCCATCCTCATGCCCTTGAAGCGCTGAA
AAACTACCGTTTCCCTGGCAACGTGAGGGAACTGGAGAACGTGCTTGAGCGGGCGCACACCCTGTGTGAAAACCGCATGA
TCGAGGCCGAAGATCTACGTCTGATCGAAGGCAACGGCACCGCCGAAGGCGGTATTGCCGATCTCACCCAGATCGACAAC
CTCGAAGACTATCTTGAGAGCGTAGAGCGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGCTACAGGCTCAAGAAGCTGGGCCTGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.684

98.884

0.788
  pilR Acinetobacter baumannii strain A118

47.93

100

0.491