Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LXN51_RS04905 Genome accession   NZ_CP090355
Coordinates   1036377..1037966 (+) Length   529 a.a.
NCBI ID   WP_085703167.1    Uniprot ID   -
Organism   Pseudomonas kribbensis strain H38E-23     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031377..1042966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN51_RS04885 (LXN51_04885) pgeF 1033166..1033900 (-) 735 WP_085703170.1 peptidoglycan editing factor PgeF -
  LXN51_RS04890 (LXN51_04890) rluD 1033897..1034859 (-) 963 WP_085703169.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LXN51_RS04895 (LXN51_04895) - 1035012..1036028 (+) 1017 WP_085697519.1 outer membrane protein assembly factor BamD -
  LXN51_RS04900 (LXN51_04900) - 1036154..1036387 (+) 234 WP_085703168.1 PP0621 family protein -
  LXN51_RS04905 (LXN51_04905) pilS 1036377..1037966 (+) 1590 WP_085703167.1 ATP-binding protein Regulator
  LXN51_RS04910 (LXN51_04910) pilR 1037963..1039309 (+) 1347 WP_085697522.1 sigma-54-dependent transcriptional regulator Regulator
  LXN51_RS04915 (LXN51_04915) thiO 1039381..1040481 (-) 1101 WP_085703166.1 glycine oxidase ThiO -
  LXN51_RS04920 (LXN51_04920) - 1040539..1040940 (-) 402 WP_039771691.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58717.55 Da        Isoelectric Point: 6.7394

>NTDB_id=641637 LXN51_RS04905 WP_085703167.1 1036377..1037966(+) (pilS) [Pseudomonas kribbensis strain H38E-23]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLNSTNDEWLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIATLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLMRRLEVSENLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAKTLLGQAHLEGELID
EYSSALVERLQLWLNNPTLRPQSLKIGGNGVELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVNESREQAGER
QHIHLHIGPGDFRTLMDPGQLMQILDNLLRNGWRHSALLHDPAEVWLTLLIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=641637 LXN51_RS04905 WP_085703167.1 1036377..1037966(+) (pilS) [Pseudomonas kribbensis strain H38E-23]
GTGATCGCTGAGGCCGACAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTGAGTGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGAACTCGACCAACGACGAGTGGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTCGAGAACATCCGCCGCCCCGCCCAGTTGTTC
GGCCTGGCACTGGTCGACATCCTGCTGCTGTGCGGCGTGTTCTATGCGGCGGGCGGCGTGGCCAGCGCGATCGGTAATTT
GCTGATTGTCTCGGTGGCGATCAGCAATACCTTACTGCGACGACGCATTGGTTTGCTGATCGCCGCCATCGCCACCCTCG
GCATCGTCGGGCTCAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAACGATTATCTCCAGGCCGGCACACTCGGC
GCCCTGTGCTTCGCGGCGTCATTGCTGGTGCAAGGATTGATGCGCCGTCTGGAGGTCAGCGAGAACCTGGCCGAACAGCG
CGCCAGCGAAGTCGTGGGGCTGGAAGCCCTCAACGCATTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAGCGCCGGGTGCAACTGGCCAACCACAGCGCCAAGACCCTGCTGGGCCAGGCACACCTTGAAGGCGAGTTGATCGAC
GAGTACTCGAGCGCATTGGTCGAGCGCCTGCAACTGTGGCTGAACAACCCGACGCTGCGCCCGCAAAGCCTGAAGATCGG
CGGCAACGGCGTGGAGCTGCAACCGAGCTTCATTGCTCTGGAACAGAGTCCGAACCGCCAGACCCTGGTATTTCTCGAAG
ACCTCGCACAGATCGCCCAGCAGGCCCAGCAATTGAAACTCGCCGCGCTGGGCCGGCTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCGCGCAGCTGTTGCGGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAACGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCACCGCAACGGCTGGATCTCAAGCCGTGGCTGGAGCAGTTCGTCAACGAGAGCCGCGAACAGGCCGGCGAGCGC
CAGCACATTCACCTGCACATCGGTCCGGGGGATTTTCGCACGCTGATGGATCCTGGCCAGCTCATGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGCGCCCTTTTGCACGATCCGGCCGAGGTCTGGCTGACGCTGCTGATCGACCCCG
AAAGCACGCTGGCCGTGCTCGAGGTGCAGGACAATGGCCCTGGCGTGCCGCTGGATCAGCAGGCTCACCTGTTCGAACCG
TTTTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601