Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LXN49_RS14655 Genome accession   NZ_CP090354
Coordinates   2879421..2880062 (-) Length   213 a.a.
NCBI ID   WP_048237325.1    Uniprot ID   -
Organism   Bacillus safensis strain H31R-08     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874421..2885062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS14620 (LXN49_14620) - 2875534..2875965 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  LXN49_RS14625 (LXN49_14625) - 2875965..2876306 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  LXN49_RS14630 (LXN49_14630) - 2876299..2877777 (+) 1479 WP_234107342.1 Na+/H+ antiporter subunit D -
  LXN49_RS14635 (LXN49_14635) - 2877784..2878263 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  LXN49_RS14640 (LXN49_14640) - 2878263..2878544 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  LXN49_RS14645 (LXN49_14645) mnhG 2878528..2878902 (+) 375 WP_144472360.1 monovalent cation/H(+) antiporter subunit G -
  LXN49_RS14650 (LXN49_14650) - 2879008..2879397 (-) 390 WP_048237324.1 hotdog fold thioesterase -
  LXN49_RS14655 (LXN49_14655) comA 2879421..2880062 (-) 642 WP_048237325.1 response regulator transcription factor Regulator
  LXN49_RS14660 (LXN49_14660) comP 2880143..2882434 (-) 2292 WP_234107343.1 ATP-binding protein Regulator
  LXN49_RS14665 (LXN49_14665) comX 2882448..2882621 (-) 174 WP_024425944.1 competence pheromone ComX -
  LXN49_RS14670 (LXN49_14670) - 2882599..2883522 (-) 924 WP_234107344.1 polyprenyl synthetase family protein -
  LXN49_RS14675 (LXN49_14675) degQ 2883674..2883814 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  LXN49_RS14680 (LXN49_14680) - 2884320..2884676 (+) 357 WP_234107345.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24206.55 Da        Isoelectric Point: 4.5747

>NTDB_id=641614 LXN49_RS14655 WP_048237325.1 2879421..2880062(-) (comA) [Bacillus safensis strain H31R-08]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILDTNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQEQQNDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=641614 LXN49_RS14655 WP_048237325.1 2879421..2880062(-) (comA) [Bacillus safensis strain H31R-08]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGACGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAGCAAATCTTAGATACCAACCATCAAGTAAAAATTATC
ATTTACACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTACAAGGAGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGAGCAGCAAAATGATCACGATCTCTTAACCGAACGAGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723