Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   HRR20_RS00170 Genome accession   NZ_AP021893
Coordinates   33003..33593 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain 2018-06-4CC     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 28003..38593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRR20_RS00140 (VEGS07_00310) yidF 28118..28615 (+) 498 WP_000148061.1 radical SAM protein -
  HRR20_RS00145 (VEGS07_00320) emrD 28623..29807 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  HRR20_RS22855 ysdE 29889..29963 (+) 75 WP_211180519.1 protein YsdE -
  HRR20_RS00150 tisB 30087..30176 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  HRR20_RS00155 ivbL 30741..30839 (+) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  HRR20_RS00160 (VEGS07_00340) ilvB 30945..32633 (+) 1689 WP_000168475.1 acetolactate synthase large subunit -
  HRR20_RS00165 (VEGS07_00350) ilvN 32637..32927 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  HRR20_RS00170 (VEGS07_00360) letA 33003..33593 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  HRR20_RS00175 (VEGS07_00370) uhpB 33593..35095 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  HRR20_RS00180 (VEGS07_00380) uhpC 35105..36424 (+) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  HRR20_RS00185 (VEGS07_00390) uhpT 36562..37953 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=64125 HRR20_RS00170 WP_000633668.1 33003..33593(+) (letA) [Escherichia coli strain 2018-06-4CC]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=64125 HRR20_RS00170 WP_000633668.1 33003..33593(+) (letA) [Escherichia coli strain 2018-06-4CC]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCTGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTTTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378

Multiple sequence alignment