Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LXM48_RS16265 Genome accession   NZ_CP090180
Coordinates   3354783..3355367 (+) Length   194 a.a.
NCBI ID   WP_205667471.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3349783..3360367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS16255 (LXM48_16255) - 3350616..3353774 (+) 3159 WP_234304368.1 CusA/CzcA family heavy metal efflux RND transporter -
  LXM48_RS16260 (LXM48_16260) - 3353860..3354633 (+) 774 Protein_3146 cation diffusion facilitator family transporter -
  LXM48_RS16265 (LXM48_16265) ssb 3354783..3355367 (+) 585 WP_205667471.1 single-stranded DNA-binding protein Machinery gene
  LXM48_RS16270 (LXM48_16270) - 3355561..3356979 (-) 1419 WP_234304369.1 aspartate ammonia-lyase -
  LXM48_RS16275 (LXM48_16275) - 3357114..3358004 (+) 891 WP_062032041.1 LysR substrate-binding domain-containing protein -
  LXM48_RS16280 (LXM48_16280) - 3358140..3359437 (-) 1298 Protein_3150 dicarboxylate/amino acid:cation symporter -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21383.16 Da        Isoelectric Point: 6.4800

>NTDB_id=641042 LXM48_RS16265 WP_205667471.1 3354783..3355367(+) (ssb) [Acinetobacter johnsonii strain DJ-Red]
MSKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEGSLR
TRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQSGY
ANNNPSGFAPKAAPQSAPAAAPADMDFPFDLYNI

Nucleotide


Download         Length: 585 bp        

>NTDB_id=641042 LXM48_RS16265 WP_205667471.1 3354783..3355367(+) (ssb) [Acinetobacter johnsonii strain DJ-Red]
ATGAGCAAAGTCATATTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTCGTTGACCCA
GTTTTCAATTGCAACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGCACCGTATTG
TGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGTTCACTGCGT
ACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGATGCTCGACAA
CAACCGTCAGCAAGGCGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACCAAGGTGGTG
GTTATAACAATAACAACAACCAAGGCGGGTATGGCGGCAATCCTGCAGCGGGCAATAGCAACAACCAACAAAGTGGTTAT
GCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGATATGGATTT
CCCTTTTGATTTGTATAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.485

100

0.495
  ssb Neisseria meningitidis MC58

39.899

100

0.407
  ssb Neisseria gonorrhoeae MS11

39.899

100

0.407