Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LXM48_RS13955 Genome accession   NZ_CP090180
Coordinates   2850588..2852009 (+) Length   473 a.a.
NCBI ID   WP_234304181.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2845588..2857009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS13935 (LXM48_13935) thrC 2845851..2846990 (+) 1140 WP_234304178.1 threonine synthase -
  LXM48_RS13940 (LXM48_13940) - 2847076..2848131 (-) 1056 WP_234304179.1 serine hydrolase -
  LXM48_RS13945 (LXM48_13945) - 2848347..2848982 (+) 636 WP_004692836.1 response regulator -
  LXM48_RS13950 (LXM48_13950) pilS 2849004..2850572 (+) 1569 WP_234304180.1 ATP-binding protein Regulator
  LXM48_RS13955 (LXM48_13955) pilR 2850588..2852009 (+) 1422 WP_234304181.1 sigma-54 dependent transcriptional regulator Regulator
  LXM48_RS13960 (LXM48_13960) - 2852014..2853189 (-) 1176 WP_234304182.1 S41 family peptidase -
  LXM48_RS13965 (LXM48_13965) gpmI 2853208..2854755 (-) 1548 WP_234304183.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  LXM48_RS13970 (LXM48_13970) lptG 2854879..2855949 (-) 1071 WP_058868725.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53179.26 Da        Isoelectric Point: 6.3917

>NTDB_id=641035 LXM48_RS13955 WP_234304181.1 2850588..2852009(+) (pilR) [Acinetobacter johnsonii strain DJ-Red]
MEKKPLVLLVDDEQDLCTLMQMSLSRMGIDTHIAYRLQEAVQALKTHQYDACLTDLNLPDGNGLSLVDFIAQNYPNLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKAFNQPISQLHIQEDTLEHRLLIGQSLPIQQLRITLKKIARSQ
APVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHRKGSFTGATQDKQGLILSAHGGSLFLDEI
AELPLTMQVKLLRAVQEKCIRPIGSDTEIDVDFRVISASHQDLEALVQQGKFRQDLYFRIHVMDIVLPALRERGNDIILL
AQHFIQKICQEWDIPVKPLSERAREFLLAQYYPGNVRELRNMMERAITLSDESSIDLPHLQTAPLRPIAQTNYANATQQG
TVGNDQLSHVPSRKLPEEGLELYLEKIEKEILMNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDGEDDSV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=641035 LXM48_RS13955 WP_234304181.1 2850588..2852009(+) (pilR) [Acinetobacter johnsonii strain DJ-Red]
GTGGAAAAAAAACCACTTGTTTTATTGGTGGATGACGAACAAGACTTATGTACACTGATGCAAATGTCTTTAAGTCGAAT
GGGGATTGATACACATATTGCCTATCGCTTACAAGAGGCGGTTCAAGCCCTGAAAACGCATCAATATGATGCCTGTCTAA
CCGATCTGAATTTACCTGATGGTAATGGCCTGAGCTTGGTTGATTTTATTGCTCAGAATTATCCTAATTTGCCTGTTGCA
GTGCTGACGGCTTACGGCAATATGGATATTGCGATTGCAGCACTTAAAGCCGGTGCTTTTGATTTTGTCAGCAAACCGAT
CAACCAAAAACATTTAGAGCAACTTTTACAAAAAGCCTTTAATCAACCCATCAGTCAGCTGCATATCCAAGAAGATACGC
TTGAACATCGTCTGCTGATTGGTCAGTCCCTTCCTATTCAGCAACTACGCATCACCTTAAAGAAAATTGCACGCTCGCAA
GCCCCTGTCTTTATTACGGGTGAATCGGGGACCGGTAAAGAAGTGGTGGCTAATCTGGTACATCGCCTGAGTAATCGTAA
TGAAGGGCCATTTATTGCCATTAACTGCGGTGCCATACCGACCGAACTGATGGAAAGTGAATTGTTTGGACACCGTAAAG
GCAGCTTCACAGGGGCCACTCAAGACAAACAAGGGCTGATTCTCTCTGCACATGGCGGCAGTTTATTTTTAGATGAAATT
GCCGAGTTACCGCTCACTATGCAGGTGAAACTGCTGCGCGCGGTACAAGAAAAATGCATTCGCCCAATTGGGAGTGACAC
GGAAATTGATGTCGATTTTCGTGTGATTAGTGCCAGCCATCAAGACCTAGAAGCACTGGTACAACAAGGCAAGTTCCGTC
AGGATTTGTACTTCCGCATCCATGTCATGGACATTGTGCTGCCTGCCCTACGTGAGCGTGGCAATGACATTATTCTTTTG
GCACAACATTTCATTCAGAAAATCTGCCAAGAATGGGACATCCCAGTCAAACCATTGAGTGAACGTGCACGTGAATTTTT
ATTGGCCCAATATTATCCAGGCAATGTGCGTGAACTACGCAACATGATGGAACGTGCCATCACCTTAAGTGATGAAAGCA
GTATCGACTTACCACACTTGCAAACAGCCCCACTGCGACCGATTGCTCAGACCAACTATGCGAATGCCACGCAACAAGGT
ACTGTTGGCAATGATCAACTCAGTCATGTGCCTTCGCGTAAATTACCCGAAGAGGGTTTAGAGCTGTATTTAGAAAAAAT
TGAAAAAGAAATTTTGATGAATGCGCTCAATCTCACCCATTGGAACCGAACACTAGCGGCTAAAAAGCTCGGTATGTCTT
TCCGTTCTTTACGTTATCGCTTGAAGAAATTCGGGCTAGATGGCGAAGACGATTCCGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

75

99.789

0.748
  pilR Pseudomonas aeruginosa PAK

49.353

98.097

0.484