Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LXM48_RS13950 Genome accession   NZ_CP090180
Coordinates   2849004..2850572 (+) Length   522 a.a.
NCBI ID   WP_234304180.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844004..2855572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS13930 (LXM48_13930) - 2844481..2845785 (+) 1305 WP_234304177.1 homoserine dehydrogenase -
  LXM48_RS13935 (LXM48_13935) thrC 2845851..2846990 (+) 1140 WP_234304178.1 threonine synthase -
  LXM48_RS13940 (LXM48_13940) - 2847076..2848131 (-) 1056 WP_234304179.1 serine hydrolase -
  LXM48_RS13945 (LXM48_13945) - 2848347..2848982 (+) 636 WP_004692836.1 response regulator -
  LXM48_RS13950 (LXM48_13950) pilS 2849004..2850572 (+) 1569 WP_234304180.1 ATP-binding protein Regulator
  LXM48_RS13955 (LXM48_13955) pilR 2850588..2852009 (+) 1422 WP_234304181.1 sigma-54 dependent transcriptional regulator Regulator
  LXM48_RS13960 (LXM48_13960) - 2852014..2853189 (-) 1176 WP_234304182.1 S41 family peptidase -
  LXM48_RS13965 (LXM48_13965) gpmI 2853208..2854755 (-) 1548 WP_234304183.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59743.19 Da        Isoelectric Point: 6.4967

>NTDB_id=641034 LXM48_RS13950 WP_234304180.1 2849004..2850572(+) (pilS) [Acinetobacter johnsonii strain DJ-Red]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFASSVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQASDPQQELLQNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNADEAEHIQIRVYSYKNLVHIEVRDFGEGVAKQDQTTLFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=641034 LXM48_RS13950 WP_234304180.1 2849004..2850572(+) (pilS) [Acinetobacter johnsonii strain DJ-Red]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTGCTGACTTATGAGCAACTGTTTTCCAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTATTTATCGTCGATGTCATTAGCCTCAGCTTACTTACTTTCGCCACCGATGGTCCGAACTTACAGTTAAGTTT
ATTGTTTGTGATCACGATCTTTGCCTCTTCTGTATTAGTCGATAAACAAAAAGCACTCATCATTACGTTGATTGCTGTGA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTTGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCCTGTGCATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TATCCCTTATATAAGGCACAGCCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAGAATGGGGAAAAATTCCAATT
TACATCCCAACTGAGCCGCTTTCAAATTCAGATCGAAATTCAAAAACTACAGGTACCGAATCAGACACTAACCTTATTCG
TCCTGCAAGATGCACAAAAAATTAATCAACGGGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAATCCACTGGCAGCCATCACTCAAGCCAATGAGTTGATGCAAGCCAGTGATCCACAACAAGAACT
GTTGCAGAACATGATCGCCAAACAAGCCTCAAGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCGACCTTGATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCGGATGAAGCCGAGCACATTCAAATTCGTGTCTATAGCTATAAAAACCTCGTCCATATTG
AGGTCCGCGATTTTGGTGAAGGGGTCGCCAAACAGGATCAAACCACCCTGTTTCAACCGTTTTTTAGTACCTCAATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

60.269

99.808

0.602