Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HRR21_RS15835 Genome accession   NZ_AP021892
Coordinates   3342112..3342789 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain 2018-01-1CC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3337112..3347789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRR21_RS15820 (VEGS02_30700) chiA 3338479..3341172 (+) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -
  HRR21_RS15825 (VEGS02_30710) bfd 3341341..3341535 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  HRR21_RS15830 (VEGS02_30720) bfr 3341607..3342083 (+) 477 WP_000675504.1 bacterioferritin -
  HRR21_RS15835 (VEGS02_30730) pilD 3342112..3342789 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  HRR21_RS15840 (VEGS02_30740) gspM 3342789..3343250 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  HRR21_RS15845 (VEGS02_30750) gspL 3343247..3344410 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  HRR21_RS15850 (VEGS02_30760) gspK 3344425..3345408 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  HRR21_RS15855 (VEGS02_30770) gspJ 3345401..3345988 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  HRR21_RS15860 (VEGS02_30780) gspI 3345981..3346358 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  HRR21_RS15865 (VEGS02_30790) gspH 3346355..3346864 (-) 510 WP_024238847.1 type II secretion system minor pseudopilin GspH -
  HRR21_RS15870 (VEGS02_30800) gspG 3346872..3347309 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=64102 HRR21_RS15835 WP_000178161.1 3342112..3342789(-) (pilD) [Escherichia coli strain 2018-01-1CC]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=64102 HRR21_RS15835 WP_000178161.1 3342112..3342789(-) (pilD) [Escherichia coli strain 2018-01-1CC]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378

Multiple sequence alignment