Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LXM48_RS04535 Genome accession   NZ_CP090180
Coordinates   911680..912387 (-) Length   235 a.a.
NCBI ID   WP_004696183.1    Uniprot ID   A0A7H8SJ59
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 906680..917387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS04515 (LXM48_04515) - 907533..908852 (+) 1320 WP_004696178.1 adenylosuccinate synthase -
  LXM48_RS04520 (LXM48_04520) - 909053..909358 (+) 306 WP_004696180.1 hypothetical protein -
  LXM48_RS04525 (LXM48_04525) - 909545..910318 (+) 774 WP_004982314.1 M48 family metallopeptidase -
  LXM48_RS04530 (LXM48_04530) - 910444..911493 (-) 1050 WP_234304739.1 NADP(H)-dependent aldo-keto reductase -
  LXM48_RS04535 (LXM48_04535) crp 911680..912387 (-) 708 WP_004696183.1 cAMP-activated global transcriptional regulator CRP Regulator
  LXM48_RS04540 (LXM48_04540) - 912535..912957 (+) 423 WP_004982311.1 OsmC family protein -
  LXM48_RS04545 (LXM48_04545) clpB 913348..915927 (+) 2580 WP_234304740.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26414.97 Da        Isoelectric Point: 4.6788

>NTDB_id=641012 LXM48_RS04535 WP_004696183.1 911680..912387(-) (crp) [Acinetobacter johnsonii strain DJ-Red]
MTSSFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANSQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESKANADDYEDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=641012 LXM48_RS04535 WP_004696183.1 911680..912387(-) (crp) [Acinetobacter johnsonii strain DJ-Red]
ATGACTTCAAGCTTTTCACAATTAAGCACTGATGCGCTGTCTCCAGGTCAACTCCCCGAGTCAGTCAAAGCATTATTAAA
ACGCGCATATATTAATCGTTATCCTAAGCGTACCACCATCGTAGATGCAGGCTCAGAATCTAAATCTTTATATTTGATTT
TAAAAGGTTCGGTCTCCATTATTCTGCGTGAAGACGATGAACGTGAAATCGTGGTCGCTTATTTAAATGCGGGTGATTTT
TTTGGGGAAATGGGGCTATTCGAAGCAAACTCACAACGCACTGCTGAAGTGCGTACACGTGATGTCTGCGAAATTGCTGA
AGTAACTTATGAAAACTTCCATGAACTCAGCAAGCAATACCCTGACCTAAGCTATGCAGTATTTGCACAGCTGGTACGCC
GTCTAAAAAATACCACACGTAAAGTGACTGACCTTGCATTTATCGATGTTTCAGGTCGTATTGCACGTTGCCTAATCGAC
TTATCGTCGCAACCTGAAGCGATGATTTTACCAAATGGCCGCCAAATTCGTATTACGCGTCAAGAGATTGGACGTATTGT
CGGTTGTTCACGTGAAATGGTTGGTCGTGTTTTGAAAACACTCGAAGAGCAAGGCATGATCGAAACTGATGGTAAAGCCA
TCTTAATTTTTGATGCCTCTTTAGAAGAGTCAAAAGCGAATGCTGATGACTATGAAGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SJ59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.064

100

0.911
  crp Vibrio cholerae strain A1552

46.602

87.66

0.409
  crp Haemophilus influenzae Rd KW20

48.205

82.979

0.4