Detailed information NTG0640994

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LXG94_RS25705
• Genome accession: NZ_CP090179
• Coordinates: 3286179..3287048 (-)
• Length: 289 a.a.
• NCBI ID: WP_005446255.1
• Uniprot ID: A0A3A1Q6Q3
• Organism: Vibrio harveyi strain XH2145
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3281179..3292048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXG94_RS25670 (LXG94_25670)	rpsP	3282181..3282429 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
LXG94_RS25675 (LXG94_25675)	rimM	3282458..3283006 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
LXG94_RS25680 (LXG94_25680)	trmD	3283034..3283777 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LXG94_RS25685 (LXG94_25685)	rplS	3283819..3284172 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
LXG94_RS25690 (LXG94_25690)	yacG	3284539..3284733 (-)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
LXG94_RS25695 (LXG94_25695)	zapD	3284796..3285536 (-)	741	WP_038897986.1	cell division protein ZapD	-
LXG94_RS25700 (LXG94_25700)	coaE	3285564..3286178 (-)	615	WP_038897988.1	dephospho-CoA kinase	-
LXG94_RS25705 (LXG94_25705)	pilD	3286179..3287048 (-)	870	WP_005446255.1	A24 family peptidase	Machinery gene
LXG94_RS25710 (LXG94_25710)	pilC	3287121..3288344 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
LXG94_RS25715 (LXG94_25715)	pilB	3288378..3290063 (-)	1686	WP_005446257.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LXG94_RS25720 (LXG94_25720)	pilA	3290067..3290531 (-)	465	WP_005446258.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
LXG94_RS25725 (LXG94_25725)	nadC	3290796..3291683 (-)	888	WP_029790346.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32536.74 Da
• Isoelectric Point: 7.5422

>NTDB_id=640994 LXG94_RS25705 WP_005446255.1 3286179..3287048(-) (pilD) [Vibrio harveyi strain XH2145]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=640994 LXG94_RS25705 WP_005446255.1 3286179..3287048(-) (pilD) [Vibrio harveyi strain XH2145]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGTGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGTTATTGCTAAAAGGTAAATGCCACAACTGCCAATCGCCTATCAGTGCTCGCTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTACCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A3A1Q6Q3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.232	100	0.972
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436