Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LXG94_RS17865 Genome accession   NZ_CP090179
Coordinates   1625245..1627503 (-) Length   752 a.a.
NCBI ID   WP_038898173.1    Uniprot ID   -
Organism   Vibrio harveyi strain XH2145     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1605556..1630173 1625245..1627503 within 0


Gene organization within MGE regions


Location: 1605556..1630173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXG94_RS17790 (LXG94_17790) - 1605556..1606326 (-) 771 WP_005446708.1 ABC transporter ATP-binding protein -
  LXG94_RS17795 (LXG94_17795) - 1606566..1608032 (-) 1467 WP_038898169.1 hypothetical protein -
  LXG94_RS17800 (LXG94_17800) - 1608490..1610037 (+) 1548 WP_005446706.1 DUF3360 family protein -
  LXG94_RS17805 (LXG94_17805) pflB 1610344..1612620 (+) 2277 WP_038898170.1 formate C-acetyltransferase -
  LXG94_RS17810 (LXG94_17810) - 1612773..1613750 (+) 978 WP_009698308.1 lipid A deacylase LpxR family protein -
  LXG94_RS17815 (LXG94_17815) pflA 1613895..1614635 (+) 741 WP_005446703.1 pyruvate formate lyase 1-activating protein -
  LXG94_RS17820 (LXG94_17820) - 1614815..1615480 (+) 666 WP_009698309.1 energy-coupling factor ABC transporter permease -
  LXG94_RS17825 (LXG94_17825) - 1615639..1616139 (+) 501 WP_005431701.1 YfbU family protein -
  LXG94_RS17830 (LXG94_17830) - 1616629..1618563 (+) 1935 WP_005431706.1 PrkA family serine protein kinase -
  LXG94_RS17835 (LXG94_17835) - 1618609..1619880 (+) 1272 WP_038898171.1 YeaH/YhbH family protein -
  LXG94_RS17840 (LXG94_17840) - 1619892..1621451 (+) 1560 WP_017819023.1 SpoVR family protein -
  LXG94_RS17845 (LXG94_17845) kdsB 1621534..1622292 (-) 759 WP_005446698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LXG94_RS17850 (LXG94_17850) - 1622292..1622471 (-) 180 WP_005378451.1 Trm112 family protein -
  LXG94_RS17855 (LXG94_17855) lpxK 1622452..1623459 (-) 1008 WP_009698313.1 tetraacyldisaccharide 4'-kinase -
  LXG94_RS17860 (LXG94_17860) msbA 1623465..1625213 (-) 1749 WP_038898172.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LXG94_RS17865 (LXG94_17865) comEC 1625245..1627503 (-) 2259 WP_038898173.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LXG94_RS17870 (LXG94_17870) - 1627512..1628021 (+) 510 WP_005446692.1 DUF2062 domain-containing protein -
  LXG94_RS17875 (LXG94_17875) lolE 1628219..1629463 (-) 1245 WP_009698315.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  LXG94_RS17880 (LXG94_17880) lolD 1629466..1630173 (-) 708 WP_029790268.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84551.18 Da        Isoelectric Point: 9.6743

>NTDB_id=640964 LXG94_RS17865 WP_038898173.1 1625245..1627503(-) (comEC) [Vibrio harveyi strain XH2145]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIARVHQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTIKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSAWLIRERSSLRTQIIAVVHKHIVQLEHFALIRALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSFGVVVRYALPKFVFLPSLFGLATAFLYSWLADFSLPTTRAFSVCLIYLLLKSALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVIAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSLSSILYNLIFIPWF
GFVVVPLMFVALIITPFSVHLANMLWQWLDWMLVPLTWSLPFALGSWQSLSSQATLWVLVLGVCVLSMRFLNREASGVLF
LVITSLVLWYERKSDGWRIEVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVIAPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAGERWKWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKTDFKLLLTGDIE
AVSEWILVRKPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=640964 LXG94_RS17865 WP_038898173.1 1625245..1627503(-) (comEC) [Vibrio harveyi strain XH2145]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCGTGTCCATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCAGTTAACAGTG
AGTTCACTACCGAAGTGACAATTAAACCCATCTTTGGGCTCTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGCATTGTGGCAAGGGCGACCGTTTCAAAGGATTCAGCGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATTGTTCAGCTTGAACACTTCGCTCTTATTCGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTACGTGATAGTGGCTTACTGCATTTGGTCTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTTGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
GTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGACTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTAAAGTCTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTATCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCCTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTGTTGCACTTATCATTACCCCGTTTTCAGTGCACTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTGTACCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAATCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGTATTGGGCGTTTGTGTGCTTTCGATGCGATTTTTAAATCGAGAAGCTTCAGGTGTTTTGTTC
TTGGTCATCACAAGTCTGGTGTTGTGGTATGAACGAAAATCTGATGGTTGGCGTATTGAAGTGTTAGATGTTGGGCATGG
ACTTGCAGTGCTCCTAGAAAAAGACGGTGAAGTGCTTTTATATGACACGGGTAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTGCTCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGCCACGCCGACTCAGAT
CATGCTGGAGGACGTGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTACGCTAACTACCA
ACCTTGTATTGCAGGGGAACGATGGAAATGGCAAGCGCTAGAATTTGAAGTTCTTTGGCCTCCGAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTCGTCGATACCAAAACGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCCGTTAGTGAATGGATCTTGGTGAGAAAACCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
GAGCTCTTCTAACCCCAAGTTTGTTGAAGCGATTGCCCCAAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTTTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)

Competence protein (Competence)

(208-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

75

100

0.75
  comEC Vibrio parahaemolyticus RIMD 2210633

65.027

100

0.65
  comEC Vibrio cholerae strain A1552

40.716

100

0.408