Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LXH20_RS11860 Genome accession   NZ_CP090150
Coordinates   2468579..2468914 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain BR-01     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2463579..2473914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXH20_RS11840 (LXH20_11840) gcvT 2464185..2465285 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  LXH20_RS11845 (LXH20_11845) - 2465709..2467379 (+) 1671 WP_038461530.1 DEAD/DEAH box helicase -
  LXH20_RS11850 (LXH20_11850) - 2467401..2468195 (+) 795 WP_014418368.1 YqhG family protein -
  LXH20_RS11855 (LXH20_11855) sinI 2468372..2468545 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  LXH20_RS11860 (LXH20_11860) sinR 2468579..2468914 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  LXH20_RS11865 (LXH20_11865) tasA 2468962..2469747 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  LXH20_RS11870 (LXH20_11870) sipW 2469812..2470396 (-) 585 WP_022552967.1 signal peptidase I SipW -
  LXH20_RS11875 (LXH20_11875) tapA 2470368..2471039 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  LXH20_RS11880 (LXH20_11880) - 2471298..2471627 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  LXH20_RS11885 (LXH20_11885) - 2471668..2471847 (-) 180 WP_022552966.1 YqzE family protein -
  LXH20_RS11890 (LXH20_11890) comGG 2471904..2472281 (-) 378 WP_022552965.1 competence type IV pilus minor pilin ComGG Machinery gene
  LXH20_RS11895 (LXH20_11895) comGF 2472282..2472677 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  LXH20_RS11900 (LXH20_11900) comGE 2472691..2473005 (-) 315 WP_021494312.1 competence type IV pilus minor pilin ComGE Machinery gene
  LXH20_RS11905 (LXH20_11905) comGD 2472989..2473426 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  LXH20_RS11910 (LXH20_11910) comGC 2473416..2473724 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=640900 LXH20_RS11860 WP_003153104.1 2468579..2468914(+) (sinR) [Bacillus velezensis strain BR-01]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=640900 LXH20_RS11860 WP_003153104.1 2468579..2468914(+) (sinR) [Bacillus velezensis strain BR-01]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991