Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LXE94_RS16505 Genome accession   NZ_CP090125
Coordinates   3069075..3069719 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064075..3074719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS16470 (LXE94_16430) mrpB 3065267..3065698 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  LXE94_RS16475 (LXE94_16435) mrpC 3065698..3066039 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  LXE94_RS16480 (LXE94_16440) mrpD 3066032..3067513 (+) 1482 WP_095843910.1 Na+/H+ antiporter subunit D -
  LXE94_RS16485 (LXE94_16445) mrpE 3067519..3067995 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  LXE94_RS16490 (LXE94_16450) mrpF 3067995..3068279 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  LXE94_RS16495 (LXE94_16455) mnhG 3068263..3068637 (+) 375 WP_041332992.1 monovalent cation/H(+) antiporter subunit G -
  LXE94_RS16500 (LXE94_16460) yuxO 3068676..3069056 (-) 381 WP_217002947.1 hotdog fold thioesterase -
  LXE94_RS16505 (LXE94_16465) comA 3069075..3069719 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  LXE94_RS16510 (LXE94_16470) comP 3069800..3072109 (-) 2310 WP_257986178.1 two-component system sensor histidine kinase ComP Regulator
  LXE94_RS16515 (LXE94_16475) comX 3072128..3072295 (-) 168 WP_041057586.1 competence pheromone ComX Regulator
  LXE94_RS16520 (LXE94_16480) comQ 3072283..3073182 (-) 900 WP_038828674.1 class 1 isoprenoid biosynthesis enzyme Regulator
  LXE94_RS16525 (LXE94_16485) degQ 3073367..3073507 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  LXE94_RS16530 (LXE94_16490) - 3073729..3073854 (+) 126 WP_003228793.1 hypothetical protein -
  LXE94_RS16535 (LXE94_16495) - 3073968..3074342 (+) 375 WP_257986179.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=640719 LXE94_RS16505 WP_003220716.1 3069075..3069719(-) (comA) [Bacillus subtilis strain Bs96]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=640719 LXE94_RS16505 WP_003220716.1 3069075..3069719(-) (comA) [Bacillus subtilis strain Bs96]
ATGAAAAAGATACTAGTGATTGATGACCACCCGGCTGTTATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1