Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LWC40_RS11410 Genome accession   NZ_CP090060
Coordinates   2438461..2440293 (-) Length   610 a.a.
NCBI ID   WP_003433862.1    Uniprot ID   A0A031WIR2
Organism   Clostridioides difficile strain CDB     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433461..2445293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWC40_RS11390 (LWC40_11390) - 2433485..2434849 (-) 1365 WP_011861492.1 aldehyde dehydrogenase -
  LWC40_RS11395 (LWC40_11395) - 2435161..2435685 (-) 525 WP_009897366.1 flavodoxin domain-containing protein -
  LWC40_RS11400 (LWC40_11400) - 2435735..2436232 (-) 498 WP_009903083.1 MarR family winged helix-turn-helix transcriptional regulator -
  LWC40_RS11405 (LWC40_11405) hflX 2436465..2437736 (-) 1272 WP_009897369.1 GTPase HflX -
  LWC40_RS11410 (LWC40_11410) rcrQ 2438461..2440293 (-) 1833 WP_003433862.1 ABC transporter ATP-binding protein Regulator
  LWC40_RS11415 (LWC40_11415) - 2440286..2442532 (-) 2247 WP_003433859.1 ABC transporter ATP-binding protein -
  LWC40_RS11420 (LWC40_11420) - 2442600..2443061 (-) 462 WP_011861494.1 MarR family winged helix-turn-helix transcriptional regulator -
  LWC40_RS11425 (LWC40_11425) - 2443366..2443932 (-) 567 WP_003423380.1 beta-class carbonic anhydrase -
  LWC40_RS11430 (LWC40_11430) - 2444619..2444957 (+) 339 WP_003423377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68031.88 Da        Isoelectric Point: 6.2927

>NTDB_id=640431 LWC40_RS11410 WP_003433862.1 2438461..2440293(-) (rcrQ) [Clostridioides difficile strain CDB]
MSRMGRGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILTFLLFLYLISALFSFIQGFIMSGISQKVSYNLRKEISAKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAVLILPISMFVISRIIKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEVQIVENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYKMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=640431 LWC40_RS11410 WP_003433862.1 2438461..2440293(-) (rcrQ) [Clostridioides difficile strain CDB]
ATGAGTAGAATGGGAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGCG
AAAACTAATTGCATATTTATCTAAATTTAAAATATCAATAATTCTAGTAATTGTATTTGCTATTGGTAGTGCGTCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGAAAGGCAACTACAAAGATATTTGAAGGGCTAGTGAGTAAAGTTTCTGGAGGAAAC
GTAGGTATAGATTTTAATGCAATTGGAAAAATCTTAACCTTTTTACTTTTCCTTTATTTGATAAGTGCACTGTTCTCTTT
TATACAAGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGCAAAATTGGATA
GATTGCCAATGAAGTATTTTGATACTAAGACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTAGTGGCAGTTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAATAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAGGAAACTTACAGTGGCCAAACAATA
GTAAAAGCATTTAATCGTGAGGATGAAGTAATTGAAGAGTTTGATAAACTAAATGATAGCCTGTATAATTCAGCGTGGAA
ATCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGTGACATACAGTCATTTATACAATATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGTCCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAAATTGATTTTGAAAATGTCA
ACTTTGGATATAACCCAAACAAGACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTGTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGAT
TGATGGTCATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATATAAGATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTCGATACTAGAACAGAAGTATTGATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAATCATGA
GGAACTTCTAAAGAAAGGCGGATTCTATGCCAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031WIR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.607

96.885

0.5