Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   PALA20_RS28305 Genome accession   NZ_CP107064
Coordinates   6025711..6027687 (-) Length   658 a.a.
NCBI ID   WP_023657200.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6020711..6032687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA20_RS28275 (PALA20_05589) - 6020868..6021977 (-) 1110 WP_011871467.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
  PALA20_RS28280 (PALA20_05590) frmR 6022037..6022312 (-) 276 WP_023093413.1 formaldehyde-responsive transcriptional repressor FrmR -
  PALA20_RS28285 (PALA20_05591) - 6022595..6023485 (-) 891 WP_023657203.1 carbon-nitrogen hydrolase family protein -
  PALA20_RS28290 (PALA20_05592) - 6023482..6024090 (-) 609 WP_023657202.1 hypothetical protein -
  PALA20_RS28295 (PALA20_05593) - 6024092..6024499 (-) 408 WP_017514126.1 ketosteroid isomerase-related protein -
  PALA20_RS28300 (PALA20_05594) - 6024654..6025559 (+) 906 WP_023657201.1 LysR family transcriptional regulator -
  PALA20_RS28305 (PALA20_05595) uvrB 6025711..6027687 (-) 1977 WP_023657200.1 excinuclease ABC subunit UvrB Machinery gene
  PALA20_RS28310 (PALA20_05596) - 6028061..6028492 (-) 432 WP_023657199.1 DUF488 family protein -
  PALA20_RS28315 (PALA20_05597) - 6028983..6029924 (+) 942 WP_023657198.1 LysR family transcriptional regulator -
  PALA20_RS28320 (PALA20_05598) - 6030392..6031606 (+) 1215 WP_023657197.1 glutathione-independent formaldehyde dehydrogenase -
  PALA20_RS28325 (PALA20_05599) - 6031587..6031865 (+) 279 WP_023657196.1 hypothetical protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 74398.54 Da        Isoelectric Point: 5.1720

>NTDB_id=640431 PALA20_RS28305 WP_023657200.1 6025711..6027687(-) (uvrB) [Pseudomonas aeruginosa strain PALA20]
MSTGMFILHSNYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILAPNKTLTAQLYGEMKH
FFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQI
ALSPGVKLNQRELIRRLALLQYDRTERTLKRATFRVQGDVIDIFPADSEHRAVRVELLDDTVASVQWMDPVTGKTLGEID
HYLVSPKTLFAPPTNKIDSASKKILADMEERVDELNRNNRLVEANRLYERITHDVEMMREVGYCSGMENYSCYFSDRDAA
SPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKDTLIDYGFRLPSSKNNRPLNFDEFEKVKPQTVFVSATPGEY
ELRVSKGRVVEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKRKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSD
IKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVARNENGKAILYADAVTP
AMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETNTEEPTVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQR
VEDIRRQLDGLYRQFIYI

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=640431 PALA20_RS28305 WP_023657200.1 6025711..6027687(-) (uvrB) [Pseudomonas aeruginosa strain PALA20]
ATGTCAACCGGTATGTTTATTCTGCACTCCAACTATACGCCGGCGGGGGACCAGCCAGAGGCGATAGCGCGCCTGCTGTC
GGACATAGAAGAAGGTGCGACGCACCAGACGCTGAAAGGTATCACCGGCTCAGGTAAGACCTTCACCATGGCCAATGTGA
TTCATCGTCTGAAGCGGCCTACGTTGATCTTGGCTCCTAACAAGACGTTGACCGCGCAGCTTTATGGTGAAATGAAGCAC
TTCTTTCCTGAGAACGCGGTCGAGTACTTCGTTTCCTACTACGATTATTTTCAGCCCGAAATCTATATGCCGGGCACCGA
TCGTTTCATTCCAAAGGACTCGGCCATCAATGACCACCTTGAGCGCCTGCGTCTGTCCACGACCAAATCCTTGATTGAAC
GTCGTGACGTGATCGTCGTCGCTTCGGTGTCCTCAATCTACGGCCTGGGTGATCCAGATGCGTACCGAGCGCTACAGATC
GCTCTGTCCCCTGGGGTCAAACTAAACCAGAGAGAGCTAATTCGTCGCTTGGCTTTGCTGCAATATGATCGCACTGAGCG
CACCCTCAAGCGCGCAACGTTCCGCGTCCAAGGCGATGTGATTGATATTTTCCCCGCTGATTCCGAGCACAGGGCGGTTC
GGGTGGAGCTGTTGGATGACACTGTTGCGTCTGTCCAATGGATGGACCCTGTTACCGGCAAGACGTTGGGAGAGATAGAC
CATTATTTGGTTTCGCCAAAAACGCTTTTTGCCCCGCCCACGAATAAAATAGATTCCGCATCCAAAAAGATACTCGCTGA
TATGGAAGAGCGGGTTGACGAGCTGAACAGGAATAATCGCTTGGTCGAGGCAAACAGGCTGTACGAGCGGATCACGCATG
ACGTGGAAATGATGCGCGAGGTCGGCTATTGCTCGGGGATGGAGAATTACTCCTGCTATTTCAGCGACCGAGACGCAGCT
TCTCCTCCGATCACGTTGCTGGATTATTTGCCGAAAGACGGGCTGCTGTTCGTCGATGAATCCCATGTCATGGTGCCACA
GATATCCGCAATGTACCGGGGGGATCAGGCGCGCAAGGACACGCTGATCGATTACGGGTTCCGTTTGCCTTCATCGAAGA
ACAACCGGCCATTGAACTTTGACGAGTTCGAGAAGGTTAAGCCTCAGACCGTCTTTGTTTCCGCTACTCCGGGCGAATAC
GAGCTGAGGGTGTCGAAAGGCAGGGTTGTCGAACAGGTCATCAGGCCAACGGGACTGCTTGACCCCAAGGTTGAAGTGCG
GAAAGCGGACGGATACATAGATGACCTGCTTGCCGAAATATCGAAGTGCGTGAAGAGAAAGAATCGAGTGCTTGTGACTA
CGCTGACGAAGGTCAGTGCAGAAGAGCTAACGGATTTCTTGACGGACAACGGGATTCGAGCGCGCTACATGCATTCGGAC
ATAAAAGCGGAGGATCGTGTTGAGATCATCAATGGCCTGCGCGCAGGAGAGTTCGATGTTTTGATTGGGATTAGTCTTTT
GCGCGAAGGGCTGGATATTCCAGAGGCATCATTGGTTGCCATTCTCGATGCAGACCGTGCAGGATTCTTGCGTTCGGCCC
ATGCGCTCATTCAGATGATCGGTCGAGTCGCTCGGAATGAGAACGGTAAGGCGATCTTGTACGCCGACGCGGTGACGCCG
GCGATGAAACAGGCGATCGATGAGACCAATAGGCGCAGGCAGCTTCAAATTGCCTTTAACGAGGAAAATGGGATTTCTCC
AGCCTCGTCTGTGCGAAAACTAGCAGGAGAAGAGACGAATACGGAGGAGCCCACCGTTCATTCCGAGGCTTTCTGCGAGA
ACTTGTCCGACCTTTGCGATCAGATCACTGCCAAGGAACAGCAGCTACTCGAATTTACCGATACCGGTGACGAGCAGCGC
GTCGAAGACATTCGTCGTCAGTTGGATGGGTTGTACCGGCAATTCATTTACATCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-103)

Ultra-violet resistance protein B (UvrB)

(553-593)

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

UvrB interaction domain (UvrB_inter)

(160-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

52.292

89.514

0.468
  uvrB Streptococcus pneumoniae R6

52.292

89.514

0.468
  uvrB Streptococcus pneumoniae D39

52.292

89.514

0.468