Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LRO94_RS17080 Genome accession   NZ_CP090029
Coordinates   3816109..3818334 (-) Length   741 a.a.
NCBI ID   WP_233896839.1    Uniprot ID   -
Organism   Pseudomonas sivasensis strain BsEB-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3811109..3823334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO94_RS17045 murB 3811477..3812496 (-) 1020 WP_122680659.1 UDP-N-acetylmuramate dehydrogenase -
  LRO94_RS17050 - 3812493..3812957 (-) 465 WP_179178806.1 low molecular weight protein-tyrosine-phosphatase -
  LRO94_RS17055 kdsB 3812957..3813721 (-) 765 WP_032889641.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LRO94_RS17060 - 3813718..3813903 (-) 186 WP_003174668.1 Trm112 family protein -
  LRO94_RS17065 lpxK 3813928..3814938 (-) 1011 WP_095184457.1 tetraacyldisaccharide 4'-kinase -
  LRO94_RS17070 - 3814938..3815366 (-) 429 WP_095184456.1 biopolymer transporter ExbD -
  LRO94_RS17075 exbB 3815363..3815998 (-) 636 WP_032890033.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LRO94_RS17080 comA 3816109..3818334 (-) 2226 WP_233896839.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LRO94_RS17085 - 3818470..3818985 (+) 516 WP_179178805.1 DUF2062 domain-containing protein -
  LRO94_RS17090 - 3818989..3820356 (-) 1368 WP_179178804.1 sensor histidine kinase -
  LRO94_RS17095 - 3820346..3821074 (-) 729 WP_179178803.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80745.80 Da        Isoelectric Point: 10.3452

>NTDB_id=640313 LRO94_RS17080 WP_233896839.1 3816109..3818334(-) (comA) [Pseudomonas sivasensis strain BsEB-1]
MKTGMFALALGLLALRFLPELPTTGWLIAMLVLVLMLLPFRTSPLAFFLLGLSWACISAQWALDDRLPPALDGQTRWLEG
RVIGLPQQTGTGVRFDLADSRSRNARLPKRIRVSWHGGPEVRSGERWRLAVTLKRPSGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLSPARHAWRDTVRQRLIAVDAQGREAGLAALVLGDGSGLAAEDWQVLQDTGTVHLLVISGQHIGLLAGLVYGL
VALLARYGFWPRMWPWLPWACGLAFASALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALNGVLILEPL
ASLQPGFWLSFTAVAVLILAFGGRLGPWGVWQAWTRPQWLIGIGLLPVLLVLGLPISVSAPLANLVAVPWISLVVLPLAL
LGTAMLPLPYLGEGLLWLAGGALDALFLGLAWLAGQVPAWIPADVPLGYWLISLMGAVLLLLPKGVPFRLLGWPMLLLAV
FPPREPVPHGRVEVVQLDVGQGQSLILRTRHHTLLYDAGLRSGTVDLGARVVLPSLKKLGVESLDMILLSHADADHAGGA
AAVARGVPIKRVVGGENEGLPAFLGAQPCISGEKWEWDGVSFELWQWSEAINGNPKSCVLQVQANGERLLLTGDIDRAAE
RAFLDSPLAVRTDWLQAPHHGSRSSSSWPFLRRLAPTSVLISRGRGNAFGHPHPQVVERYQTLGSQLYDSAEHGAVRLQL
GAFLPPIVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=640313 LRO94_RS17080 WP_233896839.1 3816109..3818334(-) (comA) [Pseudomonas sivasensis strain BsEB-1]
ATGAAGACAGGGATGTTCGCGCTGGCGCTGGGCTTGCTTGCCCTGCGTTTCCTACCTGAGTTACCGACCACTGGATGGCT
GATAGCCATGCTGGTGCTGGTTTTGATGCTGCTGCCATTTCGTACGTCTCCCTTGGCGTTTTTCCTGCTGGGCTTGAGCT
GGGCGTGCATCAGTGCGCAATGGGCGCTGGATGATCGCTTGCCACCGGCGCTCGATGGCCAGACGCGATGGTTGGAGGGG
CGCGTCATTGGGTTGCCACAACAGACCGGCACCGGGGTGCGTTTCGATCTGGCCGACAGCCGGTCGCGTAACGCCCGGTT
GCCCAAGCGCATCCGTGTGTCCTGGCACGGTGGGCCCGAGGTACGCAGCGGGGAGCGCTGGCGCCTGGCAGTCACGCTTA
AGCGGCCGTCCGGGCTGCTCAATTTTCACGGTTTTGATCAAGAGGCATGGTTGCTGGCACAACGCATTGGCGCCACTGGC
TCGGTAAAAGACGGTGAGCGCCTGTCGCCGGCCCGCCATGCCTGGCGCGACACGGTCCGCCAACGGTTGATTGCCGTCGA
CGCTCAAGGTCGCGAGGCGGGCCTGGCAGCTTTGGTGCTGGGGGACGGTTCCGGGCTGGCAGCCGAGGATTGGCAGGTGT
TGCAGGACACCGGCACGGTGCACCTGCTGGTTATTTCCGGCCAGCATATCGGCCTGCTGGCGGGGCTGGTCTACGGGTTG
GTCGCGCTACTGGCACGCTACGGTTTCTGGCCTCGAATGTGGCCATGGCTGCCGTGGGCGTGTGGCTTGGCGTTTGCGTC
CGCGCTGGGTTATGGCCTGTTGGCGGGGTTCGGTGTGCCGGTCCAGCGGGCCTGCGTCATGGTGGGCCTGGTGCTGCTGT
GGCGTTTGCGCTTCCGTCATCTGGGGTTCTGGTGGCCGTTGTTGCTGGCGCTCAATGGTGTACTGATCCTTGAACCATTG
GCCAGCCTGCAACCGGGGTTTTGGCTTTCTTTTACGGCTGTTGCCGTATTGATCCTGGCTTTCGGCGGGCGCCTGGGGCC
GTGGGGTGTCTGGCAGGCCTGGACGCGTCCTCAATGGTTGATTGGCATTGGCCTGCTTCCTGTGTTGTTGGTGCTCGGGT
TGCCCATCAGCGTCAGTGCGCCGCTGGCCAATCTGGTGGCCGTGCCTTGGATCAGTCTTGTGGTGTTGCCGCTGGCGTTG
CTGGGGACCGCCATGCTGCCGCTGCCATATTTGGGGGAGGGCTTGCTGTGGCTGGCGGGTGGGGCGCTGGATGCGTTGTT
CCTGGGTCTGGCATGGCTCGCAGGGCAAGTGCCCGCGTGGATACCTGCCGATGTGCCCTTGGGTTACTGGCTGATCAGTC
TGATGGGCGCAGTGCTGTTGTTGCTGCCCAAAGGCGTGCCGTTTCGGCTGTTGGGCTGGCCGATGTTGCTGTTGGCAGTC
TTTCCACCGCGTGAGCCGGTGCCCCATGGGCGGGTGGAGGTGGTGCAGTTGGATGTGGGGCAGGGGCAGTCGTTGATTCT
GCGTACCCGGCATCACACGTTGCTTTACGACGCCGGCCTGCGGTCTGGCACAGTTGATCTGGGGGCTCGTGTGGTATTGC
CGTCGCTGAAAAAACTCGGCGTCGAGTCACTGGACATGATTTTGCTCAGTCACGCTGATGCCGATCATGCCGGTGGGGCT
GCGGCTGTTGCCCGAGGGGTGCCGATCAAGCGGGTCGTGGGCGGCGAAAACGAAGGGTTGCCAGCGTTTCTCGGAGCCCA
GCCATGTATCAGTGGCGAGAAGTGGGAATGGGACGGTGTGTCATTCGAGTTGTGGCAGTGGTCTGAGGCTATTAATGGCA
ATCCAAAGTCTTGCGTTCTGCAGGTCCAAGCCAATGGTGAACGGCTATTGCTCACCGGGGATATTGATCGCGCCGCCGAA
CGGGCATTTCTCGACTCACCACTGGCCGTGCGGACCGATTGGCTGCAAGCCCCTCACCATGGCAGCCGGAGTTCGTCATC
CTGGCCTTTTCTACGGCGGCTGGCACCCACGTCAGTGCTGATCTCCCGTGGGCGTGGCAACGCGTTCGGCCATCCTCATC
CACAGGTGGTTGAGCGCTACCAGACGCTGGGCAGCCAGTTATATGACAGTGCTGAGCATGGAGCGGTGCGCTTGCAATTG
GGGGCTTTCCTGCCACCCATTGTTGCGCGTAGTCAACGCCGTTTTTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-660)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.335

97.031

0.595
  comA Ralstonia pseudosolanacearum GMI1000

33.962

100

0.364