Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LRO94_RS17075 Genome accession   NZ_CP090029
Coordinates   3815363..3815998 (-) Length   211 a.a.
NCBI ID   WP_032890033.1    Uniprot ID   A0A031IUY7
Organism   Pseudomonas sivasensis strain BsEB-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3810363..3820998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO94_RS17040 - 3810729..3811400 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  LRO94_RS17045 murB 3811477..3812496 (-) 1020 WP_122680659.1 UDP-N-acetylmuramate dehydrogenase -
  LRO94_RS17050 - 3812493..3812957 (-) 465 WP_179178806.1 low molecular weight protein-tyrosine-phosphatase -
  LRO94_RS17055 kdsB 3812957..3813721 (-) 765 WP_032889641.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LRO94_RS17060 - 3813718..3813903 (-) 186 WP_003174668.1 Trm112 family protein -
  LRO94_RS17065 lpxK 3813928..3814938 (-) 1011 WP_095184457.1 tetraacyldisaccharide 4'-kinase -
  LRO94_RS17070 - 3814938..3815366 (-) 429 WP_095184456.1 biopolymer transporter ExbD -
  LRO94_RS17075 exbB 3815363..3815998 (-) 636 WP_032890033.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LRO94_RS17080 comA 3816109..3818334 (-) 2226 WP_233896839.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LRO94_RS17085 - 3818470..3818985 (+) 516 WP_179178805.1 DUF2062 domain-containing protein -
  LRO94_RS17090 - 3818989..3820356 (-) 1368 WP_179178804.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22767.94 Da        Isoelectric Point: 7.3613

>NTDB_id=640312 LRO94_RS17075 WP_032890033.1 3815363..3815998(-) (exbB) [Pseudomonas sivasensis strain BsEB-1]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=640312 LRO94_RS17075 WP_032890033.1 3815363..3815998(-) (exbB) [Pseudomonas sivasensis strain BsEB-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCTTGTGGACCCTGCGCGCCAGTCGAGTCACGCCCGAGCATCTATTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGAAAAACTCAAGGCATTGCGCGCTGATTCGCCTTTGGGCGAAATCCTCGCCGCGGGCTTGGCTAAC
TCCAAGCATGGCCGCGAGATTATGAAAGAATGCATTGAAGAGGCCGCCGCCCGGGTTATTCATGAACTGGAGCGCTACAT
TAATGCTCTCGGCACCATCGCTGCCATGGCACCGTTGCTCGGTCTGCTGGGAACGGTATTGGGCATGATCGATATTTTCA
GCTCATTCATGGGGTCGGGCATGACCACCAACGCTGCCGTGCTCGCCGGGGGGATTTCCAAGGCCCTGATTACCACGGCA
GCAGGCCTGATGGTCGGTATTCCTGCGGTGTTCTTCCATCGTTTTCTGCAGCGGCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCCATCAAGTTGGTGGAAGTGGTGCAAGGCGACCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031IUY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858