Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FH104_RS00360 Genome accession   NZ_CP090014
Coordinates   79311..80183 (-) Length   290 a.a.
NCBI ID   WP_019835580.1    Uniprot ID   A0A8I1BF79
Organism   Staphylococcus hominis strain acrlk     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 74311..85183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH104_RS00345 (FH104_00345) xerC 74741..75604 (-) 864 WP_202596550.1 tyrosine recombinase XerC -
  FH104_RS00350 (FH104_00350) trmFO 75772..77079 (-) 1308 WP_002455420.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FH104_RS00355 (FH104_00355) topA 77103..79172 (-) 2070 WP_017174596.1 type I DNA topoisomerase -
  FH104_RS00360 (FH104_00360) dprA 79311..80183 (-) 873 WP_019835580.1 DNA-processing protein DprA Machinery gene
  FH104_RS00365 (FH104_00365) sucD 80441..81346 (-) 906 WP_037540990.1 succinate--CoA ligase subunit alpha -
  FH104_RS00370 (FH104_00370) sucC 81368..82534 (-) 1167 WP_017174593.1 ADP-forming succinate--CoA ligase subunit beta -
  FH104_RS00375 (FH104_00375) - 82661..83428 (-) 768 WP_049379251.1 ribonuclease HII -
  FH104_RS00380 (FH104_00380) ylqF 83412..84296 (-) 885 WP_049379252.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33605.64 Da        Isoelectric Point: 8.7142

>NTDB_id=640198 FH104_RS00360 WP_019835580.1 79311..80183(-) (dprA) [Staphylococcus hominis strain acrlk]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHDQFEMINEWESLYLKKKRFTQLTEISYDYIQTQLSRYQVNYVTSF
SSQYPSLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATNYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=640198 FH104_RS00360 WP_019835580.1 79311..80183(-) (dprA) [Staphylococcus hominis strain acrlk]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGATCAATTTGAAATGATCAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAACAGAGATTTCTTACGATTATATTCAAACCCAACTTTCTAGATATCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTTCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACGTATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACAAATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTTCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCATTATCCAAAGGAAACACGAAAGTTACGCAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTACTGCCTGGATCGATGTTTAATCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGCTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.897

100

0.369