Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FH100_RS00360 Genome accession   NZ_CP090011
Coordinates   79845..80717 (-) Length   290 a.a.
NCBI ID   WP_002448769.1    Uniprot ID   -
Organism   Staphylococcus hominis strain acrlg     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 74845..85717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH100_RS00345 (FH100_00345) xerC 75308..76171 (-) 864 WP_233172112.1 tyrosine recombinase XerC -
  FH100_RS00350 (FH100_00350) trmFO 76307..77614 (-) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FH100_RS00355 (FH100_00355) topA 77639..79708 (-) 2070 WP_002448837.1 type I DNA topoisomerase -
  FH100_RS00360 (FH100_00360) dprA 79845..80717 (-) 873 WP_002448769.1 DNA-processing protein DprA Machinery gene
  FH100_RS00365 (FH100_00365) sucD 80975..81880 (-) 906 WP_002448725.1 succinate--CoA ligase subunit alpha -
  FH100_RS00370 (FH100_00370) sucC 81902..83068 (-) 1167 WP_002448800.1 ADP-forming succinate--CoA ligase subunit beta -
  FH100_RS00375 (FH100_00375) - 83196..83963 (-) 768 WP_002455424.1 ribonuclease HII -
  FH100_RS00380 (FH100_00380) ylqF 83947..84831 (-) 885 WP_002448797.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33521.62 Da        Isoelectric Point: 8.2454

>NTDB_id=640165 FH100_RS00360 WP_002448769.1 79845..80717(-) (dprA) [Staphylococcus hominis strain acrlg]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYCFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=640165 FH100_RS00360 WP_002448769.1 79845..80717(-) (dprA) [Staphylococcus hominis strain acrlg]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGGGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATTGTTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.77

100

0.369