Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   LV497_RS06980 Genome accession   NZ_CP090007
Coordinates   1510496..1510939 (+) Length   147 a.a.
NCBI ID   WP_245084317.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505496..1515939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS06965 (LV497_06965) gdhA 1506568..1507920 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  LV497_RS06970 (LV497_06970) - 1508099..1509742 (+) 1644 WP_343086615.1 hypothetical protein -
  LV497_RS06975 (LV497_06975) - 1509900..1510310 (+) 411 WP_014633963.1 peptide deformylase -
  LV497_RS06980 (LV497_06980) rcrR 1510496..1510939 (+) 444 WP_245084317.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  LV497_RS06985 (LV497_06985) rcrP 1510943..1512757 (+) 1815 WP_038675388.1 ABC transporter ATP-binding protein Regulator
  LV497_RS06990 (LV497_06990) rcrQ 1512747..1514525 (+) 1779 WP_245084319.1 ABC transporter ATP-binding protein Regulator
  LV497_RS06995 (LV497_06995) - 1514633..1515256 (+) 624 WP_245084322.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17165.61 Da        Isoelectric Point: 9.6395

>NTDB_id=640141 LV497_RS06980 WP_245084317.1 1510496..1510939(+) (rcrR) [Streptococcus salivarius strain SALI-10]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKHFREAIHEQLLEGISKEDAETAFRVFHQIRMNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=640141 LV497_RS06980 WP_245084317.1 1510496..1510939(+) (rcrR) [Streptococcus salivarius strain SALI-10]
ATGCATGGAAAAGATACTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCTCAAGGATTTGCTGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCGGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTAGGTAAAAAGAAAGCTCGAGA
TGTCAAACATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATGCTGAAACAGCCTTTCGTG
TCTTTCACCAAATTCGTATGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558