Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LV497_RS06990 Genome accession   NZ_CP090007
Coordinates   1512747..1514525 (+) Length   592 a.a.
NCBI ID   WP_245084319.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1507747..1519525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS06970 (LV497_06970) - 1508099..1509742 (+) 1644 WP_343086615.1 hypothetical protein -
  LV497_RS06975 (LV497_06975) - 1509900..1510310 (+) 411 WP_014633963.1 peptide deformylase -
  LV497_RS06980 (LV497_06980) rcrR 1510496..1510939 (+) 444 WP_245084317.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  LV497_RS06985 (LV497_06985) rcrP 1510943..1512757 (+) 1815 WP_038675388.1 ABC transporter ATP-binding protein Regulator
  LV497_RS06990 (LV497_06990) rcrQ 1512747..1514525 (+) 1779 WP_245084319.1 ABC transporter ATP-binding protein Regulator
  LV497_RS06995 (LV497_06995) - 1514633..1515256 (+) 624 WP_245084322.1 GNAT family N-acetyltransferase -
  LV497_RS07000 (LV497_07000) - 1515404..1516027 (+) 624 WP_070438408.1 GTP pyrophosphokinase family protein -
  LV497_RS07005 (LV497_07005) - 1516029..1516706 (+) 678 WP_037601879.1 response regulator transcription factor -
  LV497_RS07010 (LV497_07010) - 1516720..1517943 (+) 1224 WP_245084325.1 HAMP domain-containing sensor histidine kinase -
  LV497_RS07015 (LV497_07015) pyrH 1518180..1518917 (+) 738 WP_002885551.1 UMP kinase -
  LV497_RS07020 (LV497_07020) frr 1518932..1519489 (+) 558 WP_014633971.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65131.04 Da        Isoelectric Point: 4.8781

>NTDB_id=640143 LV497_RS06990 WP_245084319.1 1512747..1514525(+) (rcrQ) [Streptococcus salivarius strain SALI-10]
MENKPETSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHISFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=640143 LV497_RS06990 WP_245084319.1 1512747..1514525(+) (rcrQ) [Streptococcus salivarius strain SALI-10]
ATGGAAAATAAGCCAGAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGTATCACACCTACAAAAATGGGGACGATTCCAGGTATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCCATTGTGGGTTACTTACAAAGCTTTACCGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTTCCTCTTAATTATTTTGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAAGGTTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTAGCAGCCATTATTATGATGTTTTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGTTT
TGTTCTGGTAGCCTTTATCATGGGCTTCTCACAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACGGGTCAAGCAGTCGTAACGAGTTACAATGCTGCTCAAGAAAGTAGTCAAGCTTTCAAGGGA
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGTGCCATCAAAGTTATTGATGGTAGCTTGACTATTGGTGATGTGGTAG
CCTTCATGACTTATGTTCGTATCTTCTCCCAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCCACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATATTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCTC
TTGCTAAGCCAGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGATGGTGTGGATACGAACGACATGAAACGTGAAACTGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCCAAGGCTGTCGGTGTTCACCACTTCATCACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTGTCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGATGCCCC
TCTCCTTATCTTGGATGAGGCGACATCATCTGTCGACACTCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGCCGTACTTCCTTTGTTATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688