Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   LV497_RS04050 Genome accession   NZ_CP090007
Coordinates   956082..958052 (-) Length   656 a.a.
NCBI ID   WP_037611118.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 951082..963052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS04035 (LV497_04035) - 951682..952572 (-) 891 WP_179969036.1 histidine kinase -
  LV497_RS04040 (LV497_04040) - 952632..953939 (-) 1308 WP_002885760.1 GHKL domain-containing protein -
  LV497_RS04045 (LV497_04045) gltX 954392..955846 (-) 1455 WP_037611119.1 glutamate--tRNA ligase -
  LV497_RS04050 (LV497_04050) amiA 956082..958052 (-) 1971 WP_037611118.1 peptide ABC transporter substrate-binding protein Regulator
  LV497_RS04055 (LV497_04055) rplA 958233..958922 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  LV497_RS04060 (LV497_04060) rplK 959022..959447 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  LV497_RS04065 (LV497_04065) - 959619..959972 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  LV497_RS04070 (LV497_04070) - 960068..960565 (-) 498 WP_002886981.1 carbonic anhydrase -
  LV497_RS04075 (LV497_04075) - 960716..961411 (-) 696 WP_002885783.1 TIGR00266 family protein -
  LV497_RS04080 (LV497_04080) radA 961499..962860 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 73064.83 Da        Isoelectric Point: 4.9060

>NTDB_id=640111 LV497_RS04050 WP_037611118.1 956082..958052(-) (amiA) [Streptococcus salivarius strain SALI-10]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNEDFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYDHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVQKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVVSRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=640111 LV497_RS04050 WP_037611118.1 956082..958052(-) (amiA) [Streptococcus salivarius strain SALI-10]
ATGAAAAAGAGTAAGGTATTTTTACTAGCAGCCGTAGGCCTATTATCTGTAGGTGTTTTAACGGCTTGCTCATCATCAAG
TAAGACATCTGGTAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ACATGACGACAGCCGTTAGTAACGGTGTTGATGGTCTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
CGAAGAGTATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCTGTTAAGGGCTTGAATGATTACCTGTCAGGTGCCAACAAGGACTTCTCAAATGTAGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGTCAACCAGAACCTTACTGGAATTCAAAATTGACCTACTCAGTTAC
TTGGCCTGTTAATGAAGATTTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATATCTTCTTAAATCTTTGACAACGAAGTCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTATTTTGATACAGTCAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACTGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGCTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGACCATACATCTAAAGAAAAT
GATCAGCAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAC
ATTACCTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGATTTGTCAGTAGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTTTTGAAGACTACAAATAGTGAAAATACTAAATCTTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTCAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAGTTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTGACTAAGAAACAATACGATTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGATAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.817

100

0.698
  amiA3 Streptococcus thermophilus LMD-9

68.341

100

0.684
  amiA3 Streptococcus thermophilus LMG 18311

67.58

100

0.677