Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LV497_RS03660 Genome accession   NZ_CP090007
Coordinates   884349..884867 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain SALI-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 879349..889867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS03640 (LV497_03640) - 881263..882207 (+) 945 WP_037611177.1 magnesium transporter CorA family protein -
  LV497_RS03645 (LV497_03645) - 882277..882948 (+) 672 WP_002884401.1 DUF1129 domain-containing protein -
  LV497_RS03650 (LV497_03650) - 883065..883946 (+) 882 WP_037611176.1 DUF4300 family protein -
  LV497_RS03655 (LV497_03655) rpsR 884068..884307 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  LV497_RS03660 (LV497_03660) ssb 884349..884867 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  LV497_RS03665 (LV497_03665) rpsF 884879..885169 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  LV497_RS03670 (LV497_03670) - 885373..886326 (+) 954 WP_155123893.1 hypothetical protein -
  LV497_RS03675 (LV497_03675) mutY 887494..888645 (+) 1152 WP_245085358.1 A/G-specific adenine glycosylase -
  LV497_RS03680 (LV497_03680) - 888943..889203 (-) 261 WP_002884687.1 hypothetical protein -
  LV497_RS10610 - 889224..889625 (-) 402 WP_004183523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=640110 LV497_RS03660 WP_002891844.1 884349..884867(-) (ssb) [Streptococcus salivarius strain SALI-10]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=640110 LV497_RS03660 WP_002891844.1 884349..884867(-) (ssb) [Streptococcus salivarius strain SALI-10]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCAGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAGCCTGCGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AACCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36